Diverse Basic Statistical and Graphical Functions


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Documentation for package ‘RVAideMemoire’ version 0.9-45-2

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A B C D F G I K L M O P R S U W

RVAideMemoire-package Diverse Basic Statistical and Graphical Functions

-- A --

adonis.II Type II permutational MANOVA using distance matrices
Anova.clm Anova Tables for Cumulative Link (Mixed) Models
Anova.clmm Anova Tables for Cumulative Link (Mixed) Models

-- B --

back.lsmeans Back-transformation of LSMeans
bootstrap Bootstrap
byf.hist Histogram for factor levels
byf.mqqnorm QQ-plot for factor levels
byf.mshapiro Shapiro-Wilk test for factor levels
byf.normhist Deprecated functions in RVAideMemoire package
byf.qqnorm QQ-plot for factor levels
byf.shapiro Shapiro-Wilk test for factor levels

-- C --

chisq.bin.exp Expected counts for comparison of response probabilities to given values
chisq.bintest Pearson's Chi-squared test for binary variables
chisq.exp Expected counts for comparison of proportions to given values
chisq.multcomp Pairwise comparisons after a chi-squared goodness-of-fit test
chisq.theo.bintest Pearson's Chi-squared test for comparison of response probabilities to given values
chisq.theo.multcomp Pairwise comparisons after a chi-squared test for given probabilities
cochran.qtest Cochran's Q test
cor.2comp Comparison of 2 Pearson's linear correlation coefficients
cor.conf Equality of a Pearson's linear correlation coefficient to a given value
cor.multcomp Comparison of several Pearson's linear correlation coefficients
cor.sparse Correlation between variables and components in sparse multivariate analyses
cox.resid Martingale residuals of a Cox model
cramer.test Cramer's association coefficient
cv Coefficient of variation
CvM.test Two-sample Cramer-von Mises test

-- D --

DA.confusion Classification error rate of a Discriminant Analysis
DA.valid Cross-validation in Discriminant Analysis
DA.var Deprecated functions in RVAideMemoire package
dendro.gp Dendrogram and number of groups to be chosen

-- F --

fc.multcomp Deprecated functions in RVAideMemoire package
fisher.bintest Fisher's exact test for binary variables
fisher.multcomp Pairwise comparisons using Fisher's exact test
fp.test Fligner-Policello test
fp.test.default Fligner-Policello test
fp.test.formula Fligner-Policello test
friedman.rating.test Deprecated functions in RVAideMemoire package

-- G --

G.bintest G-test for binary variables
G.multcomp Pairwise comparisons after a G-test
G.test G-test
G.theo.multcomp Pairwise comparisons after a G-test for given probabilities

-- I --

ind.contrib Individual contributions in regression

-- K --

kruskal.rating.test Deprecated functions in RVAideMemoire package

-- L --

LDA.format Re-formating LDA data
least.rect Least rectangles linear regression
logis.fit Graphical adujstment of a simple binary logistic regression to data
logis.noise Creating a nls model for logistic regression from fitted values of a glm model

-- M --

mod Mode
mood.medtest Mood's median test
mood.medtest.default Mood's median test
mood.medtest.formula Mood's median test
mqqnorm Multivariate normality QQ-Plot
mshapiro.test Shapiro-Wilk multivariate normality test
multinomial.multcomp Pairwise comparisons after an exact multinomial test
multinomial.test Exact multinomial test
multinomial.theo.multcomp Pairwise comparisons after an exact multinomial test for given probabilities
MVA.synt Synthesis quality of multivariate analyses

-- O --

overdisp.glmer Estimation of overdispersion with 'glmer' models

-- P --

pairwise.G.test Pairwise comparisons for proportions using G-tests
pairwise.manova Deprecated functions in RVAideMemoire package
pairwise.mood.medtest Pairwise Mood's median tests
pairwise.perm.manova Pairwise permutational MANOVAs
pairwise.perm.t.test Pairwise permutational t tests
pairwise.to.groups Letter summary of similarities and differences
pairwise.wilcox.rating.test Deprecated functions in RVAideMemoire package
pcor (Semi-)Partial correlation
pcor.test Tests for (semi-)partial association/correlation between paired samples
perm.anova Permutational Analysis of Variance
perm.bartlett.test Permutational Bartlett's test of homogeneity of variances
perm.cor.test Permutational Pearson's correlation test
perm.t.test Permutational Student's t-test
perm.t.test.default Permutational Student's t-test
perm.t.test.formula Permutational Student's t-test
perm.var.test Permutational F test to compare two variances
perm.var.test.default Permutational F test to compare two variances
perm.var.test.formula Permutational F test to compare two variances
plot1comp.ind Plot of indiviuals and their class on a single axis (component)
plot1comp.var Plot of correlation between predictor variables and a single component
plotresid Simple analysis of model residuals
plotsurvivors Survivor curve
PLSDA.ncomp Graphical help to number of components selection in PLS-DA
PLSDA.test Permutational test for the discriminant ability of the factor in PLS-DA
PLSDA.VIP Variable Importance in the Projection (VIP)
predict.coadisc Predict method for CDA
prop.bin.multcomp Pairwise comparisons after a test for given probabilities
prop.multcomp Pairwise comparisons after a test for given proportions
prop.multinom.test Wald test for comparison of proportions

-- R --

rating.lsmeans LSMeans for Cumulative Link (Mixed) Models
rating.prob Observed rating frequencies
reg.ci Confidence intervals of a simple linear regression
RVAideMemoire Diverse Basic Statistical and Graphical Functions

-- S --

s.corcircle2 Plot of the factorial maps of a correlation circle
scat.cr "Correlation" of variables to axes in MCA or mix analyses
scat.mix.categorical Representation of qualitative variables in Hill and Smith mix analysis
scat.mix.numeric Representation of numeric variables in Hill and Smith mix analysis
scatter.coa2 Plot of the factorial maps for a correspondence analysis
se Standard error of the mean
seq2 Sequence generation
spearman.ci Confidence interval of a Spearman's rank correlation coefficient

-- U --

user.cont User defined contrasts for LSMeans

-- W --

wald.ptheo.test Wald test for comparison of a proportion to a theoretical value
wilcox.paired.multcomp Non parametric pairwise comparisons for paired data
wilcox.paired.rating.multcomp Deprecated functions in RVAideMemoire package
wilcox.rating.signtest Deprecated functions in RVAideMemoire package
wilcox.rating.test Deprecated functions in RVAideMemoire package
wilcox.signtest Wilcoxon sign test
wilcox.signtest.default Wilcoxon sign test
wilcox.signtest.formula Wilcoxon sign test