nLTT-package |
Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves. |
ABC_SMC_nLTT |
A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees. |
exampleTrees |
example trees to test the functionality of the package |
MCMC_nLTT |
Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree. |
nLTT |
Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves. |
nLTT.lines |
Normalized version of the ape function ltt.lines. |
nLTT.plot |
Normalized version of the ape function ltt.plot |
normLTTdiffABS |
Calculate the absolute difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees. |
normLTTdiffSQ |
Calculate the squared difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees. |