![[R logo]](../../../doc/html/logo.jpg){kind=logo}
![[Up]](../../../doc/html/left.jpg){kind=small}
![[Top]](../../../doc/html/up.jpg){kind=small}
| phyloTop-package | Phylogenetic Tree Topological Properties Evaluator |
| allNodeAnalysis | All Node Analysis |
| avgLadder | Tree Analysis Functions |
| baseAnalysis | Fast Model Analysis |
| baseCreate | Fast Model Analysis |
| baseListAnalysis | Fast Model Analysis |
| baseListCreate | Fast Model Analysis |
| cherries | Tree Analysis Functions |
| classifyConfigFive | Configurations in Trees |
| classifyConfigFour | Configurations in Trees |
| colless | Tree Analysis Functions |
| configFind | Configurations in Trees |
| configShow | Tree Graphics |
| configTop | Configurations in Trees |
| configurations | Configurations in Trees |
| dists | All Node Analysis |
| exampleSummary | Example Tree Summary |
| fastModelAnalysis | Fast Model Analysis |
| fAvgLadder | Functions from Bases to Topological Properties |
| fColless | Functions from Bases to Topological Properties |
| fNConfig | Functions from Bases to Topological Properties |
| fNLadders | Functions from Bases to Topological Properties |
| fWidths | Functions from Bases to Topological Properties |
| getgenealogy | Simulated outbreaks with genealogies |
| homTrees | Homogeneous Trees |
| idNodeLabel | Utility Functions |
| ILnumber | Tree Analysis Functions |
| ladderDist | Node Analysis Functions |
| ladderNums | All Node Analysis |
| ladderShow | Tree Graphics |
| laddItr | Ladder Iteration Tool |
| makephylotree | Simulated outbreaks with genealogies |
| maketranstree | Simulated outbreaks with genealogies |
| maxheight | Tree Analysis Functions |
| modelAnalysis | Model Analysis |
| modelCreate | Model Analysis |
| modelSummary | Model Analysis |
| nConfig | Configurations in Trees |
| nDescendants | All Node Analysis |
| nLadders | Tree Analysis Functions |
| nodeAnalysis | Node Analysis Functions |
| nodeApply | All Node Analysis |
| nodeDist | Node Analysis Functions |
| nodeFrac | Tree Analysis Functions |
| nodeImb | Node Analysis Functions |
| nTipChildren | Utility Functions |
| nTipDescendants | All Node Analysis |
| phyloCheck | Utility Functions |
| phyloTop | Phylogenetic Tree Topological Properties Evaluator |
| pitchforks | Tree Analysis Functions |
| rootLaddDist | Root Ladder Distance |
| rtree4 | Utility Functions |
| rTrees | Random Trees |
| sackin | Tree Analysis Functions |
| sortmyepi | Simulated outbreaks with genealogies |
| splitTop | Tree Analysis Functions |
| ssTrees | Super Spreader Trees |
| stairs | Tree Analysis Functions |
| subtreeShow | Tree Graphics |
| topFuncs | Functions from Bases to Topological Properties |
| topSumm | Tree Analysis Functions |
| treeAnalysis | Tree Analysis Functions |
| treeGraphics | Tree Graphics |
| treeImb | All Node Analysis |
| treeListSummary | Model Analysis |
| utility | Utility Functions |
| widths | Tree Analysis Functions |