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| rehh-package | Searching for footprints of selection using Haplotype Homozygosity based tests |
| bifurcation.diagram | plot of an haplotype bifurcation diagram |
| calc_ehh | EHH and iHH computations at a given core SNP |
| calc_ehhs | EHHS and iES computations at a given core SNP |
| data2haplohh | Converting data into an object of class haplohh |
| distribplot | Distribution of standardized iHS or Rsb values |
| haplohh-class | Class '"haplohh"' |
| haplohh_cgu_bta12 | Example of an 'haplohh' object |
| ies2rsb | Compute Rsb (standardized ratio of iES from two populations) |
| ihh2ihs | Compute iHS (standardized iHH) |
| ihsplot | Plot iHS over a genome |
| make.example.files | Creating example input files |
| rehh | Searching for footprints of selection using Haplotype Homozygosity based tests |
| rsbplot | Plot Rsb over a genome |
| scan_hh | Computing EHH based statistics over a whole chromosome |
| wgscan.cgu | Whole genome scan results for the CGU (Creole from Guadeloupe island) |
| wgscan.eut | Whole genome scan results for a pooled of European taurine cattle |