Hybrid Simulation and Genome Scan for Dominant Markers


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Documentation for package ‘AFLPsim’ version 0.4-2

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AFLPsim-package Hybrid Simulation and Genome Scan for Dominant Markers
bayescan Identifying candidate loci under natural selection with external application
demosimhybrid Demographic model of introgressive hybridization
gscan Genome scan for hybrids
hybridindex Estimate hybrid index por 'hybridsim' objects
hybridize AFLP simulator with selection from parental data
hybridsim AFLP simulator with selection
plot.demosimhybrid Plotting 'demosimhybrid' objects
plot.hybridsim Plotting hybridsim objects
sim2arlequin Converting hybridsim object to a Arlequin input file
sim2bayescan Converting hybridsim object to a Bayescan input file
sim2genind Converting a hybridsim object to a genind object
sim2introgress Converting hybridsim object to introgress
sim2newhybrids Converting hybridsim object to a NewHybrids input file
sim2popgene Converting hybridsim object to a PopGene input file
sim2structure Convert a hybridsim object to a STRUCTURE input file