Nested Association Mapping


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Documentation for package ‘NAM’ version 1.5.1

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NAM-package Nested Association Mapping
.Random.seed Internal functions
ben Whole-genome Regression
calcSize Internal functions
chr Tetra-seed Pods
cleanREP Manage Duplicated Genotypes
covar Internal functions
eigX Internal functions
emBA Internal functions
emBB Internal functions
emBC Internal functions
emBL Internal functions
emDE Internal functions
emEN Internal functions
emRR Internal functions
fam Tetra-seed Pods
Fst Fixation Index
funI Internal functions
funX Internal functions
G2A_Kernels Internal functions
Gdist Internal functions
Gen Multi-environmental trial
gen Tetra-seed Pods
gibbs Bayesian Mixed Model
gibbs2 Bayesian Mixed Model
gmm Genomic mixed model
gs Internal functions
gwas Empirical Bayes Genome Wide Association Mapping
gwas2 Empirical Bayes Genome Wide Association Mapping
gwas3 Empirical Bayes Genome Wide Association Mapping
gwasGE Empirical Bayes Genome Wide Association Mapping
Import_data Internal functions
inputRow Internal functions
KMUP Internal functions
KMUP2 Internal functions
LD Internal functions
markov Internal functions
MCreml Restricted Maximum Likelihood
met Multi-environmental trial
meta3 Empirical Bayes Genome Wide Association Mapping
ml Bayesian Mixed Model
NAM Nested Association Mapping
NNcov Internal functions
NNsrc Internal functions
Obs Multi-environmental trial
PedMat Internal functions
PedMat2 Internal functions
plot.fst Fixation Index
plot.gibbs Bayesian Mixed Model
plot.H2 SNP heritability
plot.NAM Manhattan plot for Association Studies
RcppExports Internal functions
reference Changing the Reference Genotype
reml Restricted Maximum Likelihood
SAMP Internal functions
SAMP2 Internal functions
snpH2 SNP heritability
snpQC SNP Quality Control
timesMatrix Internal functions
timesVec Internal functions
tpod Tetra-seed Pods
wgr Whole-genome Regression
y Tetra-seed Pods