Biological Network Construction, Visualization and Analyses


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Documentation for package ‘ProNet’ version 1.0.0

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ProNet-package Biological Network Construction, Visulization and Analyses
assemble Operation of networks
ath Arabidopsis thaliana Biogrid PPI database
cluster Network clustering
comp.rand.subnet Comparing a sub network to the randomly simulated ones
comp.subnet Comparing a sub network to the whole one
construction Network construction
construct_local Local network construction
construct_nlocal Non-local network construction
enrichment.annotation GO enrichment annotation
extraction Subnetwork extraction
go.profiles GO enrichment comparison
GO_component GO component annotation database
GO_function GO function annotation database
GO_process GO process annotation database
graph.add Network union
HPRD HPRD PPI database
human Homo sapiens Biogrid PPI database
location Hierarchical plot of biological network
locDB Gene products' location database
mcode MCODE network clustering
net.attack Network attack
net.comparing Comparing two networks
net.robustness Network robustness
ProNet Biological Network Construction, Visulization and Analyses
topology Network topology analysis
topology_anc Average neighborhood connectivity statistics
topology_betweenness Betweenness statistics
topology_closeness Closeness statistics
topology_cluster_coeffi Clustering coefficient statistics
topology_degree Degree statistics
topology_ec Eigenvector centrality statistics
topology_shortest_paths Shortest path statistics
topology_simple Basic statistics
visualization Network visualization