chillR-package | Statistical methods for phenology analysis in temperate fruit trees |
bloom_prediction | Bloom prediction from chilling and forcing requirements, assumed to be fulfilled strictly in sequence |
california_stations | Weather stations in California |
check_temperature_scenario | Check temperature scenario for consistency |
chile_agromet2chillR | Convert a weather file downloaded from the Chilean Agromet website to chillR format |
chilling | Calculation of chilling and heat from hourly temperature records |
Chilling_Hours | Calculation of cumulative chill according to the Chilling Hours Model |
chilling_hourtable | Add chilling and heat accumulation to table of hourly temperatures |
chillR | Statistical methods for phenology analysis in temperate fruit trees |
color_bar_maker | Make color scheme for bar plots in outputs of the chillR package |
daily_chill | Calculation of daily chill and heat accumulation |
Dynamic_Model | Calculation of cumulative chill according to the Dynamic Model |
extract_differences_between_characters | Identify shared leading or trailing character strings |
extract_temperatures_from_grids | Extract temperature information from gridded dataset |
fix_weather | Weather data fixer and quality checker |
GDD | Calculation of cumulative heat according to the Growing Degree Day Model |
GDH | Calculation of cumulative heat according to the Growing Degree Hours Model |
get_last_date | Get the last date from a phenology record |
get_weather | Download weather data from online database |
handle_chile_agromet | List, download or convert to chillR format data from the Chilean Agromet database |
handle_cimis | List, download or convert to chillR format data from the CIMIS database |
handle_gsod | List, download or convert to chillR format data from the Global Summary of the Day database |
handle_ucipm | List, download or convert to chillR format data from the UCIPM database |
handle_wunderground | List, download or convert to chillR format data from the Weather Underground airport database |
identify_common_string | Identify shared leading or trailing character strings |
interpolate_gaps | Linear gap interpolation |
KA_bloom | Cherry bloom data for Klein-Altendorf, Germany |
KA_weather | Weather data for Klein-Altendorf, Germany |
leap_year | Leap year finder |
make_all_day_table | Fill in missing days in incomplete time series |
make_california_UCIPM_station_list | Makes a list of the UC IPM weather stations |
make_chill_plot | Plot climate metrics over time |
make_climate_scenario_from_files | Make climate scenario from multiple saved csv files |
make_daily_chill_figures | Produce image of daily chill and heat accumulation |
make_daily_chill_plot | Plot daily climate metric accumulation throughout the year |
make_hourly_temps | Make hourly temperature record from daily data |
make_JDay | Make Julian Day in dataframe |
make_multi_pheno_trend_plot | Combine multiple phenology contour plots in one figure |
make_pheno_trend_plot | Make image showing phenology response to temperatures during two phases |
ordered_climate_list | Sort files in a folder, so that numbers are in ascending sequence |
plot_climate_scenarios | Plot multiple chilling scenario groups (or for other metrics) |
plot_PLS | Output of Partial Least Squares analysis results of phenology vs. daily mean temperatures |
PLS_chill_force | Partial Least Squares analysis of phenology vs. accumulated daily chill and heat |
PLS_pheno | Partial Least Squares analysis of phenology vs. daily mean temperatures |
read_tab | Read csv table regardless of whether it is a true csv or the French type |
runn_mean | Running mean of a vector |
select_by_file_extension | Select string that end in a particular way (e.g. a certain file extension) |
stack_hourly_temps | Stacking of hourly temperatures |
step_model | Calculation of cumulative temperature metric according to a user-defined stepwise weight function |
temperature_generation | Generation of synthetic temperature records |
temperature_scenario_baseline_adjustment | Make temperature scenario relative to a particular baseline |
temperature_scenario_from_records | Make monthly temperature scenario from historic records |
tempResponse | Calculation of climatic metrics from hourly temperature records |
test_if_equal | Test if all character vectors in a string are equal |
Utah_Model | Calculation of cumulative chill according to the Utah Model |
VIP | Calculate VIP scores for PLS regression |
weather2chillR | Convert downloaded weather to chillR format |
YEARMODA2Date | YEARMODA to Date conversion |