Calculating Proportionality Between Vectors of Compositional Data


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Documentation for package ‘propr’ version 2.1.8

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abstract Abstract Two propr Objects
adjacent The propr Package
aldex.cor Correlate CLR with a Continuous Measurement
aldex2propr Import 'ALDEx2' Object
bokeh Visualize Proportionality
bucket Visualize Proportionality
caneToad.counts Example Cane Toad Count Data
caneToad.groups Example Cane Toad Group Data
cytescape Visualize Proportionality
dendroCheck Dendrogram Plot Check
dendrogram Visualize Proportionality
differentialCheck Differential Proportionality Check
ggdend Dendrogram Plot Wrapper
lr2cor Correlate CLR with a Continuous Measurement
mail Mock Mail Count Data
migraph 'igraph' Helper Functions
migraph.add 'igraph' Helper Functions
migraph.clean 'igraph' Helper Functions
migraph.color 'igraph' Helper Functions
multiplot Plot Multiple Graphs
packageCheck Package Check
pca Visualize Proportionality
perb Calculate Proportionality
phis Calculate Proportionality
phit Calculate Proportionality
plot-method The propr Package
plotCheck Plot Check
prism Visualize Proportionality
progress Make Progress Bar
promptCheck Feature Check
prop2prob Calculate Probability from Proportionality
proportionality Calculate Proportionality
propr The propr Package
propr-class The propr Package
proprALR Calculates the additive log-ratio transformation.
proprCLR Calculates the centered log-ratio transformation.
proprPairs Recasts proportionality matrix as a table of feature pairs.
proprPerb Calculate proportionality metric rho (Erb 2016).
proprPhit Calculate proportionality metric phi (Lovell 2015).
proprSym Symmetrizes a proportionality matrix.
proprTri Retrieve the lower left triangle of a proportionality matrix.
proprVLR Calculates the variance of the log of the ratios.
show-method The propr Package
simplify The propr Package
slate Visualize Proportionality
smear Visualize Proportionality
snapshot Visualize Proportionality
subset-method The propr Package
top Example propr Object
visualize Visualize Proportionality
[-method The propr Package