Pedigree Inference from SNPs


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Documentation for package ‘sequoia’ version 0.8.1

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%ina% Value Matching
AddParPed Partial pedigree fix
DyadCompare Compare dyads
eqv Comparison
FacToNum Convert factor to numeric
GenoConvert Convert genotype file
is.wholenumber function in Examples from integer base
LH_HSg5 Example life history file
MakeAgeprior Age priors
NumToID replace numbers by names
orderLH Order lifehistory data
pasteD paste directory and file name
PedCompare Compare two Pedigrees
Ped_HSg5 Example pedigree
rc Find siblings
ReadTable Data input
SeqDup Check data for duplicates.
SeqParSib Fortran wrapper
SeqPrep Check parameter values and save as named vector.
sequoia Pedigree Reconstruction
SibMatch Find the closest matching inferred sibship to a true sibship
SimGeno Simulated genotypes
SimGeno_example Example genotype file
Table table
tbl.logic create a table, and ensure that the levels TRUE, FALSE and NA are always all represented
Vcomp Compare two vectors
VtoM transform vector to matrix