Detecting Differentially Expressed Genes in Time Course RNA-Seq Data


[Up] [Top]

Documentation for package ‘timeSeq’ version 1.0.2

Help Pages

timeSeq_1.0.2-package Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
pAbp Example Data in Vignette
simulate.dt Example Data in Vignette
timeSeq Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
timeSeq.heatmap Heatmap of the Most Significant NDPE Genes
timeSeq.permutate Bootstrap method for Significance Testing of NPDE genes
timeSeq.screeplot Scree Plot of Kullback Leibler Distance Ratios
timeSeq.sort Sort NDPE Genes by Kullback Leibler Distance Ratios
timeSeq_1.0.2 Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model