ablist | Dataset with 420 antibiotics |
abname | Name of an antibiotic |
anti_join_bactlist | Join a table with 'bactlist' |
as.mic | Class 'mic' |
as.rsi | Class 'rsi' |
atc_property | Properties of an ATC code |
bactlist | Dataset with ~2500 microorganisms |
bactlist.umcg | Translation table for UMCG with ~1100 microorganisms |
EUCAST_rules | EUCAST expert rules |
first_isolate | Determine first (weighted) isolates |
full_join_bactlist | Join a table with 'bactlist' |
inner_join | Join a table with 'bactlist' |
inner_join_bactlist | Join a table with 'bactlist' |
interpretive_reading | EUCAST expert rules |
is.mic | Class 'mic' |
is.rsi | Class 'rsi' |
join | Join a table with 'bactlist' |
key_antibiotics | Key antibiotics based on bacteria ID |
left_join_bactlist | Join a table with 'bactlist' |
mo_property | Poperties of a microorganism |
right_join_bactlist | Join a table with 'bactlist' |
rsi | Resistance of isolates |
rsi_df | Resistance of isolates in data.frame |
rsi_predict | Predict antimicrobial resistance |
semi_join_bactlist | Join a table with 'bactlist' |
septic_patients | Dataset with 2000 blood culture isolates of septic patients |