Adaptive Shrinkage of Correlation and Covariance Matrices


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Documentation for package ‘CorShrink’ version 0.1-5

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bootcorSE_calc Calculate bootstrap SE for the Fisher z-scores of correlations
bootpcorSE_calc Calculate bootstrap SE for the Fisher z-scores of partial correlations
common_samples A matrix of common samples between tissues in sample_by_feature_data Calculates the total non-NA expressions for a pair of tissues (of 53 tissues) and records that in the cell corresponding to each tissue pair
CorShrinkData Adaptive shrinkage of correlations from a data matrix
CorShrinkMatrix Adaptive shrinkage of a matrix of pairwise correlations.
CorShrinkVector Adaptive shrinkage of a vector of correlations
pairwise_corr_matrix An example matrix of pairwise correlations A matrix of pairwise correlations computed from the sample_by_feature_data.
sample_by_feature_data Samples by features data matrix with missing values A matrix with 544 samples (persons) and 53 features (tissues) of GTEx expression data for gene ENSG00000166819 (https://www.gtexportal.org/home/).