Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis


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Documentation for package ‘NetworkToolbox’ version 1.1.1

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animals Animal Verbal Fluency Data
behavOpen NEO-PI-3 for Resting-state Data
betweenness Betwenness Centrality
binarize Binarize Network
bootgen Bootstrapped Network Generalization
bootgenPlot Bootstrapped Network Generalization Plots
centlist List of Centrality Measures
closeness Closeness Centrality
clustcoeff Clustering Coefficient
commboot Bootstrapped Communities Likelihood
conn Network Connectivity
convert2igraph Convert Network(s) to igraph's Format
convertConnBrainMat Import CONN Toolbox Brain Matrices to R format
cor2cov Convert Correlation Matrix to Covariance Matrix
cpmEV Connectome-based Predictive Modeling-External Validation
cpmFP Connectome-based Predictive Modeling-Fingerprinting
cpmFPperm Connectome-based Predictive Modeling-Fingerprinting Permutation
cpmIV Connectome-based Predictive Modeling-Internal Validation
degree Degree
depend Dependency Network Approach
depna Dependency Neural Networks
distance Distance
ECO ECO Neural Network Filter
ECOplusMaST ECO+MaST Network Filter
edgerep Edge Replication
eigenvector Eigenvector Centrality
hybrid Hybrid Centrality
impact Node Impact
is.graphical Determines if Network is Graphical
lattnet Generates a Lattice Network
leverage Leverage Centrality
LoGo Local/Global Sparse Inverse Covariance Matrix
louvain Louvain Community Detection Algorithm
MaST Maximum Spanning Tree
nams Network Adjusted Mean/Sum
neoOpen NEO-PI-3 Openness to Experience Data
neuralcorrtest Neural-Behavioral Correlation Test
neuralgrouptest Neural Network Group Statistics Tests
neuralnetfilter Neural Network Filter
neuralstat Local and Global Neural Network Characteristics
pathlengths Characteristic Path Lengths
PMFG Planar Maximally Filtered Graph
randnet Generates a Random Network
reg Regression Matrix
rspbc Randomized Shortest Paths Betweenness Centrality
semnetboot Partial Bootstrapped Semantic Network Analysis
semnetmeas Semantic Network Measures
smallworldness Small-worldness Measure
splitsamp Split sample
splitsampNet Network Construction for splitsamp
splitsampStats Statistics for splitsamp Networks
strength Node Strength
threshold Threshold Filter
TMFG Triangulated Maximally Filtered Graph
transitivity Transitivity