Post Processing of (Half-)Hourly Eddy-Covariance Measurements


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Documentation for package ‘REddyProc’ version 1.1.3

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B D E F G L N P R S U misc

REddyProc-package Post Processing of (Half-)Hourly Eddy-Covariance Measurements

-- B --

BerkeleyJulianDateToPOSIXct BerkeleyJulianDateToPOSIXct

-- D --

DEGebExample Eddy covariance data from Gebesee crop site, Germany

-- E --

Example_DETha98 Eddy covariance data from Tharandt, Germany

-- F --

fAddNCFVar fAddNCFVar
fCalcAVPfromVMFandPress fCalcAVPfromVMFandPress
fCalcETfromLE fCalcETfromLE
fCalcExtRadiation fCalcExtRadiation
fCalcPotRadiation fCalcPotRadiation
fCalcRHfromAVPandTair fCalcRHfromAVPandTair
fCalcSunPosition fCalcSunPosition
fCalcSVPfromTair fCalcSVPfromTair
fCalcVPDfromRHandTair fCalcVPDfromRHandTair
fCheckHHTimeSeries fCheckHHTimeSeries
fConvertCtoK fConvertCtoK
fConvertGlobalToVisible fConvertGlobalToVisible
fConvertKtoC fConvertKtoC
fConvertTimeToPosix fConvertTimeToPosix
fConvertVisibleWm2toPhotons fConvertVisibleWm2toPhotons
fLloydTaylor Temperature dependence of soil respiration
fLoadEuroFlux16 fLoadEuroFlux16
fLoadFluxNCInfo Get site information from BGI NetCDF files
fLoadFluxNCIntoDataframe Load NetCDF file
fLoadTXTIntoDataframe Load text file with one header and one unit row into data frame
fReadTimeBerkeley fReadTimeBerkeley
fReadTimeSeveralCols fReadTimeSeveralCols
fWriteDataframeToFile fWriteDataframeToFile

-- G --

getAmerifluxToBGC05VariableNameMapping getAmerifluxToBGC05VariableNameMapping
getBGC05ToAmerifluxVariableNameMapping getBGC05ToAmerifluxVariableNameMapping
getExamplePath getExamplePath
getFilledExampleDETha98Data getFilledExampleDETha98Data
getREddyProcExampleDir getREddyProcExampleDir
getTZone getTZone

-- L --

LightResponseCurveFitter LightResponseCurveFitter
LightResponseCurveFitter-class Class '"LightResponseCurveFitter"'
LightResponseCurveFitter_computeCost LightResponseCurveFitter computeCost
LightResponseCurveFitter_computeLRCGradient LightResponseCurveFitter computeLRCGradient
LightResponseCurveFitter_fitLRC LightResponseCurveFitter fitLRC
LightResponseCurveFitter_getOptimizedParameterPositions LightResponseCurveFitter getOptimizedParameterPositions
LightResponseCurveFitter_getParameterInitials LightResponseCurveFitter getParameterInitials
LightResponseCurveFitter_getParameterNames LightResponseCurveFitter getParameterNames
LightResponseCurveFitter_getPriorLocation LightResponseCurveFitter getPriorLocation
LightResponseCurveFitter_getPriorScale LightResponseCurveFitter getPriorScale
LightResponseCurveFitter_isParameterInBounds LightResponseCurveFitter isParameterInBounds
LightResponseCurveFitter_optimLRC LightResponseCurveFitter optimLRC
LightResponseCurveFitter_optimLRCBounds LightResponseCurveFitter optimLRCBounds
LightResponseCurveFitter_optimLRCOnAdjustedPrior LightResponseCurveFitter optimLRCOnAdjustedPrior
LightResponseCurveFitter_predictGPP LightResponseCurveFitter predictGPP
LightResponseCurveFitter_predictLRC LightResponseCurveFitter predictLRC
LogisticSigmoidLRCFitter LogisticSigmoidLRCFitter
LogisticSigmoidLRCFitter-class Class '"LogisticSigmoidLRCFitter"'
LogisticSigmoidLRCFitter_predictGPP LogisticSigmoidLRCFitter predictGPP

-- N --

NonrectangularLRCFitter NonrectangularLRCFitter
NonrectangularLRCFitter-class Class '"NonrectangularLRCFitter"'
NonrectangularLRCFitter_getParameterNames NonrectangularLRCFitter getParameterNames
NonrectangularLRCFitter_predictGPP NonrectangularLRCFitter predictGPP

-- P --

partGLControl partGLControl
partGLControlLasslopCompatible partGLControlLasslopCompatible
partGLExtractStandardData partGLExtractStandardData
partitionNEEGL partitionNEEGL
POSIXctToBerkeleyJulianDate POSIXctToBerkeleyJulianDate

-- R --

RectangularLRCFitter RectangularLRCFitter
RectangularLRCFitter-class Class '"RectangularLRCFitter"'
RectangularLRCFitterCVersion RectangularLRCFitterCVersion
RectangularLRCFitterCVersion-class Class '"RectangularLRCFitterCVersion"'
RectangularLRCFitter_predictGPP RectangularLRCFitter predictGPP
REddyProc Post Processing of (Half-)Hourly Eddy-Covariance Measurements
renameVariablesInDataframe renameVariablesInDataframe
RHLightResponseCostC RHLightResponseCostC

-- S --

sDATA globalDummyVars
sEddyProc sEddyProc
sEddyProc-class Class '"sEddyProc"'
sEddyProc_initialize sEddyProc_initialize - Initialization of sEddyProc
sEddyProc_sCalcPotRadiation sEddyProc sCalcPotRadiation
sEddyProc_sEstUstarThreshold sEddyProc$sEstUstarThreshold - Estimating ustar threshold
sEddyProc_sEstUstarThresholdDistribution sEddyProc sEstUstarThresholdDistribution
sEddyProc_sExportData sEddyProc$sExportData - Export internal sDATA data frame
sEddyProc_sExportResults sEddyProc$sExportData - Export internal sTEMP data frame with result columns
sEddyProc_sFillInit sEddyProc$sFillInit - Initialize gap filling
sEddyProc_sFillLUT sEddyProc$sFillLUT - Gap filling with Look-Up Table (LUT)
sEddyProc_sFillMDC sEddyProc$sFillMDC - Gap filling with Mean Diurnal Course (MDC)
sEddyProc_sGetData sEddyProc$sGetData - Get internal sDATA data frame
sEddyProc_sGLFluxPartition sGLFluxPartition: Flux partitioning after Lasslop et al. (2010)
sEddyProc_sMDSGapFill sEddyProc$sMDSGapFill - MDS gap filling algorithm
sEddyProc_sMDSGapFillAfterUstar sEddyProc$sMDSGapFillAfterUstar - MDS gap filling algorithm after u * filtering
sEddyProc_sMDSGapFillAfterUStarDistr GapFilling for several filters of estimated friction velocity Ustar thresholds.
sEddyProc_sMRFluxPartition sEddyProc$sMRFluxPartition - Flux partitioning after Reichstein et al. (2005)
sEddyProc_sPlotDailySums sEddyProc$sPlotDailySums - Image with daily sums of each year
sEddyProc_sPlotDailySumsY sEddyProc$sPlotDailySumsY - Plot daily sum of specified year
sEddyProc_sPlotDiurnalCycle sEddyProc$sPlotDiurnalCycle - Image with diurnal cycles of each month
sEddyProc_sPlotFingerprint sEddyProc$sPlotFingerprint - Image with fingerprints of each year
sEddyProc_sPlotFingerprintY sEddyProc$sPlotFingerprintY - Plot fingerprint of specified year
sEddyProc_sPlotHHFluxes sEddyProc sPlotHHFluxes
sEddyProc_sPlotHHFluxesY sEddyProc$sPlotHHFluxesY - Plot half-hourly fluxes of specified year
sEddyProc_sPlotNEEVersusUStarForSeason sEddyProc$sPlotNEEVersusUStarForSeason - Image with NEE versus UStar for each Temperature class of given season
sEddyProc_sSetLocationInfo sEddyProc sSetLocationInfo
sID globalDummyVars
sINFO globalDummyVars
sLOCATION globalDummyVars
sPlotFingerprint sEddyProc$sPlotFingerprint - Image with fingerprints of each year
sTEMP globalDummyVars
sUSTAR globalDummyVars

-- U --

usControlUstarEst usControlUstarEst
usControlUstarSubsetting usControlUstarSubsetting
usCreateSeasonFactorMonth usCreateSeasonFactorMonth
usCreateSeasonFactorMonthWithinYear usCreateSeasonFactorMonthWithinYear
usCreateSeasonFactorYday usCreateSeasonFactorYday
usCreateSeasonFactorYdayYear usCreateSeasonFactorYdayYear
usEstUstarThreshold usEstUstarThreshold - Estimating ustar threshold
usEstUstarThresholdSingleFw1Binned usEstUstarThresholdSingleFw1Binned
usEstUstarThresholdSingleFw2Binned usEstUstarThresholdSingleFw2Binned
usGetAnnualSeasonUStarMap usGetAnnualSeasonUStarMap
usGetSeasonalSeasonUStarMap usGetSeasonalSeasonUStarMap
usGetYearOfSeason usGetYearOfSeason

-- misc --

_REddyProc_RHLightResponseCostC RHLightResponseCostC