RVPedigree-package |
RVPedigree: A package for region-based genetic association tests. |
ASKAT.region |
Run the ASKAT method on a genomic region defined by a start and a stop base pair coordinate |
Estim.H0.ASKAT |
Estimation of the variance components under the null model using the ASKAT method |
Estim.H0.NormalizedASKAT |
Estimation of the variance components under the null model using the normalized ASKAT method |
Estim.H0.VCC |
Estimate the model parameters under the null model |
GetRelMatrix |
Estimate relationship matrix based on pedigree or genomic data |
Normality.test |
Test for normality of the trait/phenotype |
NormalizedASKAT.region |
Run the normalized ASKAT method on a genomic region defined by a start and a stop base pair coordinate |
readMapFile |
Read file with information about SNPs chromosome and position, for example from regular PLINK .map OR .bim file |
RVPedigree |
RVPedigree main function |
VCC1.region |
Run the VC-C1 method on a genomic region defined by a start and a stop base pair coordinate |
VCC2.region |
Run the VC-C2 method on a genomic region defined by a start and a stop base pair coordinate |
VCC3.region |
Run the VC-C3 method on a genomic region defined by a start and a stop base pair coordinate |