GWAS for Multiple Observations on Related Individuals


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Documentation for package ‘RepeatABEL’ version 1.1

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RepeatABEL-package GWAS for repeated observations on related individuals
compute.GRM Computes a Genetic Relationship Matrix from a GenABEL object
constructV Constructs the (co)variance matrix for y
Create_gwaa_scan Creates a scan.gwaa object
flycatchers 10,000 SNPs from 849 collared flycatchers
gen.data Example GenABEL data
Phen.Data Example phenotype data
preFitModel Fits a linear mixed model (without fixed SNP effects) and computes the fitted variance-covariance matrix for later use in the rGLS function.
RepeatABEL GWAS for repeated observations on related individuals
rGLS GWAS for Studies having Repeated Measurements on Related Individuals
simulate_PhenData Simulation function for the RepeatABEL package.
SmoothSNPmatrix Imputes column means to missing genotypes
thinned.flycatchers 10,000 SNPs from 200 collared flycatchers