BisseToHisse | BisseToHisse |
GetModelAveNodeRates | Model average rates at tips and nodes |
GetModelAveTipRates | Model average rates at tips and nodes |
hisse | Hidden State Speciation and Extinction |
hisse.null4 | Four state trait-independent Hidden State Speciation and Extinction |
MarginRecon | Ancestral State Estimation based on Marginal Reconstruction |
ParDrop | Transition Rate matrix generator |
ParEqual | Transition Rate matrix generator |
plot.hisse.states | Plotting function hisse.states objects |
SimToPhylo | Convert simulated result to a tree |
SimulateHisse | Simulate under a HiSSE model |
SupportRegion | Adaptive Sampling of the Likelihood Surface |
TransMatMaker | Transition Rate matrix generator |