R/hoardeR-package | Collect and Retrieve Annotation Data for Various Genomic Data Using Different Web Services. |
blastSeq | Sending Genomic Sequences to NCBI Blast service |
exportBed | Exporting a Bed File. |
exportFA | Exporting a Fasta File. |
findSpecies | Search in the 'species'' Object. |
getAnnotation | Downloading or Importing of Annotation Data |
getEnsgInfo | Retrieve Gene Information From the NCBI Database. |
getFastaFromBed | Get fasta information based on locations in bed-format |
getGeneLocation | Extracting Gene Locations |
getGeneSeq | Extracting a gene sequence from NCBI database. |
importBed | Importing a Bed File. |
importBlastTab | Import a Tab Delimited Blast Output File |
importFA | Importing a Fasta File. |
importXML | Import an XML File produced by the blastSeq function |
intersectXMLAnnot | Intersect XML object with annotation object |
plotHit | Visualization of a cross-species hit |
print-method | Print an fa Object |
print.fa | Print an fa Object |
species | Available species at NCBI |
subDose | Rewrite the Dose File from a Beagle Output |
subGprobs | Rewrite the Gprobs File from a Beagle Output |
subPhased | Rewrite the Phased File from a Beagle Output |
summary-method | Summarize an fa Object |
summary.fa | Summarize an fa Object |
tableSpecies | Tables the species in xml file |
targetScan | Retrieving miRNA target information from targetscan.org |