Spatial Inference using Integrated Nested Laplace Approximation

[Up] [Top]

Documentation for package ‘inlabru’ version 2.1.3

Help Pages

bincount 1D LGCP bin count simulation and comparison with data
bru Convenient model fitting using (iterated) INLA
bru.components bru components
bru.options Additional bru options
countdata1 1-Dimensional Homogeneous Poisson example.
countdata2 1-Dimensional NonHomogeneous Poisson example.
countdata3a 1-Dimensional NonHomogeneous Poisson example.
countdata3b 1-Dimensional NonHomogeneous Poisson example.
cov2_1D 1-Dimensional NonHomogeneous Poisson example.
cprod Cross product of integration points
deltaIC Summarise DIC and WAIC from 'lgcp' objects.
devel.cvmeasure Variance and correlations measures for prediction components
E_nc1 1-Dimensional Homogeneous Poisson example.
E_nc2 1-Dimensional NonHomogeneous Poisson example.
E_nc3a 1-Dimensional NonHomogeneous Poisson example.
E_nc3b 1-Dimensional NonHomogeneous Poisson example.
generate Generate samples from fitted bru and inla models
generate.bru Sampling based on bru posteriors
gg ggplot2 geomes for inlabru related objects
gg.data.frame Geom for data.frame
gg.inla.mesh Geom for inla.mesh objects
gg.inla.mesh.1d Geom for inla.mesh.1d objects
gg.matrix Geom for matrix
gg.prediction Geom for predictions
gg.RasterLayer Geom for RasterLayer objects
gg.SpatialGridDataFrame Geom for SpatialGridDataFrame objects
gg.SpatialLines Geom for SpatialLines objects
gg.SpatialPixels Geom for SpatialPixels objects
gg.SpatialPixelsDataFrame Geom for SpatialPixelsDataFrame objects
gg.SpatialPoints Geom for SpatialPoints objects
gg.SpatialPolygons Geom for SpatialPolygons objects
globe Plot a globe using rgl
glplot Render Spatial* and inla.mesh objects using RGL
glplot.inla.mesh Visualize SpatialPoints using RGL
glplot.SpatialLines Visualize SpatialLines using RGL
glplot.SpatialPoints Visualize SpatialPoints using RGL
gm ggplot geom for spatial data
gmap Plot a map using extend of a spatial object
gorillas Gorilla Nesting Sites.
init.tutorial Global setting for tutorial sessions
inlabru inlabru
int Weighted summation (integration) of data frame subsets
ipoints Generate integration points
lambda1_1D 1-Dimensional Homogeneous Poisson example.
lambda2_1D 1-Dimensional NonHomogeneous Poisson example.
lambda3_1D 1-Dimensional NonHomogeneous Poisson example.
lgcp Log Gaussian Cox process (LGCP) inference using INLA
like Likelihood construction for usage with bru
mexdolphin Pan-tropical spotted dolphins in the Gulf of Mexico.
mrsea Marine renewables strategic environmental assessment
multiplot Multiple ggplots on a page.
pixels Generate 'SpatialPixels' covering an 'inla.mesh'
plot.bru Plot method for posterior marginals estimated by bru
plot.prediction Plot prediction using ggplot2
plotsample Create a plot sample.
point2count Convert a plot sample of points into one of counts.
Poisson1_1D 1-Dimensional Homogeneous Poisson example.
Poisson2_1D 1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D 1-Dimensional NonHomogeneous Poisson example.
predict.bru Prediction from fitted bru model
predict.inla Prediction from fitted inla model
pts1 1-Dimensional Homogeneous Poisson example.
pts2 1-Dimensional NonHomogeneous Poisson example.
pts3 1-Dimensional NonHomogeneous Poisson example.
sample.lgcp Sample from an inhomogeneous Poisson process
seals Seal pups
sline Convert data frame to SpatialLinesDataFrame
spatial.to.ppp Convert SpatialPoints and boundary polygon to spatstat ppp object
spde.posterior Posteriors of SPDE hyper parameters and Matern correlation or covariance function.
spoly Convert a data.frame of boundary points into a SpatialPolgonsDataFrame
stransform Coordinate transformation for spatial objects
summary.bru Summary for a bru fit
toygroups Simulated 1D animal group locations and group sizes
vertices Vertices
vertices-method Vertices
vertices.inla.mesh Extract vertex locations from an 'inla.mesh'