Linear Mixed Effects Models for Genome-Wide Association Studies


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Documentation for package ‘lmem.gwaser’ version 0.1.0

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gwas.analysis Performs GWAS analysis with five optional models and different optional thresholds.
gwas.cross Read genomic data to perform GWAS analyses.
linkdis.plots Linkage Disequilibrium heatmap plot
mq.g.diagnostics Performs molecular markers quality diagnostics.
pca.analysis Principal Component Analysis.
QA_geno Name of the file containing genotypic (marker scores) information.
QA_map Name of the file containing marker map information
QA_pheno Name of the file containing phenotypic information
QA_sim Name of the file containing phenotypic information