A Graphical User Interface for Microarray Data Analysis and Annotation

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Documentation for package ‘maGUI’ version 2.2

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maGUI-package A Graphical User Interface for Microarray Data Analysis and Annotation
affym Preprocessing and Analysis of Loaded Affymetrix Data
agone Preprocessing and Analysis of Loaded Agilent_OneColor Data
agtwo Preprocessing and Analysis of Loaded Agilent_TwoColor Data
clas Classification of Differentially Expression Genes
clust Clustering of Normalized Microarray Data
dge Differntial Gene Expression of Filtered Data
dmo Preprocessing and Analysis of Loaded Online Data
dmsm Preprocessing and Analysis of Loaded Series_Matrix Data
filter_sp2 Specific Filtering on Normalized Microarray Data
filter_unsp UnSpecific Filtering on Normalized Microarray Data
graph_gsea_goBP Plots Graph of GO Terms for Biological Process of GSEA
graph_gsea_goCC Plots Graph of GO Terms for Cellular Component of GSEA
graph_gsea_goMF Plots Graph of GO Terms for Molecular Function of GSEA
graph_gsea_kegg Plots Graph of Pathways for a KEGG ID from GSEA
graph_gsta_goBP Plots Graph of GO Terms for Biological Process of GSTA
graph_gsta_goCC Plots Graph of GO Terms for Cellular Component of GSTA
graph_gsta_goMF Plots Graph of GO Terms for Molecular Function of GSTA
graph_gsta_kegg Plots Graph of Pathways for a KEGG ID from GSTA
gsea_goBP Gene Set Enrichment Analysis for Biological Process
gsea_goCC Gene Set Enrichment Analysis for Cellular Component
gsea_goMF Gene Set Enrichment Analysis for Molecular Function
gsea_kegg Gene Set Enrichment Analysis for KEGG Pathways
gsta_goBP Gene Set Test Analysis for Biological Process
gsta_goCC Gene Set Test Analysis for Cellular Component
gsta_goMF Gene Set Test Analysis for Molecular Function
gsta_kegg Gene Set Test Analysis for KEGG Pathways
illbead Preprocessing and Analysis of Loaded Illumina_Beadarray Data
illlumi Preprocessing and Analysis of Loaded Illumina_Lumi Data
maGUI A Graphical User Interface for Microarray Data Analysis and Annotation
nimblg Preprocessing and Analysis of Loaded Nimblegen Data
ntwk Co-regulated Network for Differentially Expressed Genes
pca Pricipal Component Analysis on Normalized Microarray Data
ppis Protein-Protein Interactions Prediction from Microarray Data
sse Sample Size Estimation on Normalized Microarray Data
stat_sign Statisitical Significance of Filtering Data
symbol Mapping of Identifiers of Microarray Data to Genes