calc_RMSE |
Internal function to calculate the Root Mean Square Error to select the maximum interval size. |
check_anchors |
Replace sub-linkage groups (e.g. 1.1, 1.2) with truncated linkage group number and split per chromosome for easy integration |
check_cM |
internal position check |
genphys_fit |
Model the relationship between genetical and physical genome positions |
LPmerge_par |
Wrapper for multicore and multichromosome merging of maps using the LPmerge |
map_cohesion |
Graph check whether maps can be integrated |
map_export |
Convert a consensus genetic map created with mapfuser to JoinMap format |
map_flip |
Invert a linkage group |
map_orient |
Corrects orientation of input genetic maps |
map_qc |
Wrapper function of genetic map cleaning per linkage group. |
map_split |
Replace sub-linkage groups (e.g. 1.1, 1.2) with truncated linkage group number and split per chromosome for easy integration |
plot.mapfuser |
Visualise mapfuser object data |
predict.mapfuser |
Predict centiMorgan positions from fitted gam models on the mapfuser object |
read_joinmap |
Internal function, read genetic maps in JoinMap format |
read_maps |
Read genetic maps |
read_ref |
Load a reference map |
remove_manual |
Manually remove a linkage group within a specific map and update man networks and minimum spanning tree |
select_result |
Select result from mapfuser |
summary.mapfuser |
internal position check |