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| metabolomics-package | metabolomics package |
| .Random.seed | Random seed |
| ColList | A list of colours for plots |
| ContrastMatrix | Contrast matrix |
| Dendrogram | Hierarchical Cluster Analysis Dendrograms |
| editcolnames | Edit column names of a metabolomic data matrix |
| FoldChange | Fold change |
| GroupSummary | Summary of the groups |
| HeatMap | Heat map |
| LinearModelFit | Linear models |
| LogTransform | Log transformation |
| metabdata-class | Metabolomic data - class |
| metabolomics | metabolomics package |
| metabolomicsChanges | Changes made to the metabolomics package |
| MetBoxPlots | Box plots of a specified metabolite across groups |
| MissingValues | Missing value replacement |
| MmsPlot | Mean, Median, Standard deviation plot |
| Normalise | Normalisation |
| PcaPlots | PCA plots |
| results-class | Metabolomic data results - class |
| RlaPlots | RLA plots |
| ScatterPlot | Scatter plot |
| treated | A metabolomics study with paired observations. |
| TwoGroup | Comparing two biological conditions in a metabolomics data matrix |
| TwoGroupPlots | Plots of differential metabolites |
| VolcanoPlot | Volcano plot |