morse-package |
MOdelling tools for Reproduction and Survival data in Ecotoxicology |
cadmium1 |
Reproduction and survival datasets for _Daphnia magna_ exposed to cadmium during 21 days |
cadmium2 |
Reproduction and survival datasets for _Lymnaea stagnalis_ exposed to cadmium during 28 days |
chlordan |
Reproduction and survival datasets for _Daphnia magna_ exposed to chlordan during 21 days |
copper |
Reproduction and survival datasets for _Daphnia magna_ exposed to copper during 21 days |
dichromate |
Survival dataset for _Daphnia magna_ exposed to dichromate during 21 days |
is_exposure_constant |
Test in a well-formed argument to function 'survData' if the concentration is constant and different from 'NA' for each replicate (each time-serie) |
LCx |
Predict X% Lethal Concentration at the maximum time point (default). |
LCx.survFit |
Predict x% Lethal Concentration at any specified time point for a 'survFit' object. |
morse |
MOdelling tools for Reproduction and Survival data in Ecotoxicology |
plot.LCx |
Plotting method for 'LCx' objects |
plot.reproData |
Plotting method for 'reproData' objects |
plot.reproFitTT |
Plotting method for 'reproFitTT' objects |
plot.survDataCstExp |
Plotting method for 'survData' objects |
plot.survDataVarExp |
Plotting method for 'survDataVarExp' objects |
plot.survFitCstExp |
Plotting method for 'survFit' objects |
plot.survFitPredict |
Plotting method for 'survFitPredict' objects |
plot.survFitTKTD |
Plotting method for 'survFitTKTD' objects |
plot.survFitTT |
Plotting method for 'survFitTT' objects |
plot.survFitVarExp |
Plotting method for 'survFit' objects |
plotDoseResponse |
Plot dose-response from raw data |
plotDoseResponse.reproData |
Plot dose-response from 'reproData' objects |
plotDoseResponse.survData |
Plot dose-response from 'survData' objects |
ppc |
Posterior predictive check plot |
ppc.reproFitTT |
Posterior predictive check plot for 'reproFitTT' objects |
ppc.survFitCstExp |
Posterior predictive check plot for 'survFitCstExp' objects |
ppc.survFitTKTD |
Posterior predictive check plot for 'survFitTKTD' objects |
ppc.survFitTT |
Posterior predictive check plot for 'survFitTT' objects |
ppc.survFitVarExp |
Posterior predictive check plot for 'survFitVarExp' objects |
predict.survFit |
Predict method for 'survFit' objects |
print.reproFitTT |
Print of 'reproFitTT' object |
print.survFitCstExp |
Print of 'survFit' object |
print.survFitTKTD |
Print of 'survFitTKTD' object |
print.survFitTT |
Print of 'survFitTT' object |
print.survFitVarExp |
Print of 'survFitVarExp' object |
priors_survData |
Create a list of scalars giving priors to use in Bayesian modelling |
propiconazole |
Survival dataset for _Gammarus pulex_ exposed to propiconazole during four days |
propiconazole_pulse_exposure |
Survival dataset for _Gammarus pulex_ exposed to propiconazole during 10 days with time-variable exposure concentration (non-standard pulsed toxicity experiments) |
reproData |
Creates a dataset for reproduction toxicity analysis |
reproDataCheck |
Checks if an object can be used to perform reproduction toxicity data analysis |
reproFitTT |
Fits a Bayesian concentration-effect model for target-time reproduction analysis |
summary.reproData |
Summary of 'reproData' object |
summary.reproFitTT |
Summary of 'reproFitTT' object |
summary.survDataCstExp |
Summary of 'survDataCstExp' object |
summary.survDataVarExp |
Summary of 'survDataVarExp' object |
summary.survFit |
Summary of 'survFit' object |
summary.survFitTKTD |
Summary of 'survFitTKTD' object |
summary.survFitTT |
Summary of 'survFitTT' object |
survData |
Creates a dataset for survival analysis |
survDataCheck |
Checks if an object can be used to perform survival analysis |
survData_join |
Joins a concentration with a survival dataset into an argument for 'survData' when the concentration varies over time |
survFit |
Method to fit a model for survival data using Bayesian inference |
survFit.survDataCstExp |
Fits a TKTD model for survival analysis using Bayesian inference for 'survDataCstExp' object |
survFit.survDataVarExp |
Fits a TKTD model for survival analysis using Bayesian inference for 'survDataVarExp' object |
survFitTKTD |
Fits a TKTD for survival analysis using Bayesian inference for 'survDataTKTD' object |
survFitTT |
Fits a Bayesian concentration-response model for target-time survival analysis |
survFitTT.survDataCstExp |
Fits a Bayesian concentration-response model for target-time survival analysis |
zinc |
Reproduction and survival datasets for _Daphnia magna_ exposed to zinc during 21 days |