A Set of Tools that Enhance Reproducibility Beyond Package Management


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Documentation for package ‘reproducible’ version 0.1.4

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reproducible-package The 'reproducible' package
%>% Pipe that is Cache-aware, being deprecated
%C% A cache-aware pipe that does not mask with %>%
.addTagsToOutput Add tags to object
.addTagsToOutput-method Add tags to object
.cacheMessage Create a custom cache message by class
.cacheMessage-method Create a custom cache message by class
.checkCacheRepo Check for cache repository info in ...
.checkCacheRepo-method Check for cache repository info in ...
.debugCache Attach debug info to return for Cache
.installPackages Internal function to install packages
.objSizeInclEnviros Determine object size of all objects inside environments
.objSizeInclEnviros-method Determine object size of all objects inside environments
.orderDotsUnderscoreFirst Sort or order any named object with dotted names and underscores first
.preDigestByClass Any miscellaneous things to do before '.robustDigest' and after 'FUN' call
.preDigestByClass-method Any miscellaneous things to do before '.robustDigest' and after 'FUN' call
.prepareFileBackedRaster Copy the file-backing of a file-backed Raster* object
.prepareOutput Make any modifications to object recovered from cacheRepo
.prepareOutput-method Make any modifications to object recovered from cacheRepo
.sortDotsUnderscoreFirst Sort or order any named object with dotted names and underscores first
.tagsByClass Add extra tags to an archive based on class
.tagsByClass-method Add extra tags to an archive based on class
asPath Coerce a character string to a class "Path"
asPath.character Coerce a character string to a class "Path"
Cache Cache method that accommodates environments, S4 methods, Rasters
cache Deprecated functions
Cache-method Cache method that accommodates environments, S4 methods, Rasters
cache-method Deprecated functions
checkoutVersion Clone, fetch, and checkout from GitHub.com repositories
checkPath Check filepath
checkPath-method Check filepath
clearCache Examining and modifying the cache
clearCache-method Examining and modifying the cache
clearStubArtifacts Clear erroneous archivist artifacts
clearStubArtifacts-method Clear erroneous archivist artifacts
compareNA 'NA'-aware comparison of two vectors
Copy Recursive copying of nested environments, and other "hard to copy" objects
Copy-method Recursive copying of nested environments, and other "hard to copy" objects
copyFile Copy a file using 'Robocopy' on Windows and 'rsync' on Linux/macOS
installedVersions Determine versions all installed pacakges
installVersions Install exact package versions from a package version text file & GitHub
keepCache Examining and modifying the cache
keepCache-method Examining and modifying the cache
newLibPaths A shortcut to create a .libPaths() with only 2 folders
normPath Normalize filepath
normPath-method Normalize filepath
package_dependenciesMem Memoised version of package_dependencies
Path-class Coerce a character string to a class "Path"
pipe A cache-aware pipe that does not mask with %>%
pipe2 Pipe that is Cache-aware, being deprecated
pkgDep Determine package dependencies, first looking at local filesystem
pkgSnapshot Take a snapshot of all the packages and version numbers
readLinesRcpp Alternative to readLines that is faster
readLinesRcppInternal Alternative to readLines that is faster
reproducible The 'reproducible' package
Require Repeatability-safe install and load packages, optionally with specific versions
searchFull Search up the full scope for functions
searchFullEx Search up the full scope for functions
showCache Examining and modifying the cache
showCache-method Examining and modifying the cache