Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Documentation for package ‘ouch’ version 2.16

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ouch-package	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd	Greater Antillean anolis lizard sexual size dimorphism data
ape2ouch	Convert an "ape" tree to an "ouch" tree.
bimac	Anolis bimaculatus lizard size data.
bootstrap	Bootstrapping for uncertainty quantification
bootstrap-hansentree,	Bootstrapping for uncertainty quantification
bootstrap-method	Bootstrapping for uncertainty quantification
brown	Phylogenetic Brownian motion models
coef	Model coefficients
coef-hansentree,	Model coefficients
coef-method	Model coefficients
hansen	Ornstein-Uhlenbeck models of trait evolution
hansentree-class	Ornstein-Uhlenbeck models of trait evolution
logLik	Log likelihood of a fitted model
logLik-hansentree,	Log likelihood of a fitted model
logLik-method	Log likelihood of a fitted model
ouchtree	Phylogenetic tree object in 'ouch' format.
ouchtree-class	Phylogenetic tree object in 'ouch' format.
paint	Painting regimes on a phylogenetic tree
plot	ouch plotting functions
plot-hansentree	ouch plotting functions
plot-method	ouch plotting functions
print	Print methods
print-hansentree,	Print methods
print-method	Print methods
show-hansentree,	Print methods
show-method	Print methods
simulate	Simulations of a phylogenetic trait model.
simulate-hansentree,	Simulations of a phylogenetic trait model.
simulate-method	Simulations of a phylogenetic trait model.
summary	Summary methods
summary-hansentree,	Summary methods
summary-method	Summary methods
update	Update and refit a model.
update-hansentree,	Update and refit a model.
update-method	Update and refit a model.