CalcBYprobs | Birth year probabilities |
CalcMaxMismatch | Maximum Number of Mismatches |
CalcOHLLR | Calculate OH and LLR |
CalcPairLL | Calculate Likelihoods for Alternative Relationships |
CalcRped | Calculate Pedigree Relatedness |
CheckGeno | Check Genotype Matrix |
ComparePairs | Compare Pairwise Relationships |
DyadCompare | Compare Dyads |
ErrToM | Generate Genotyping Error Matrix |
EstConf | Confidence Probabilities |
FieldMums_griffin | Example field-observed mothers: griffins |
FindFamilies | Assign Family IDs |
GenoConvert | Convert Genotype Data |
getAssignCat | Assignability of Reference Pedigree |
getGenerations | Count Generations |
GetLLRAge | LLR-age from Ageprior Matrix |
GetMaybeRel | Find Putative Relatives |
GetRelM | Matrix with Pairwise Relationships |
Inherit | Inheritance patterns |
LHConvert | Extract Sex and Birth Year from PLINK File |
LH_griffin | Example lifehistory data: griffins |
LH_HSg5 | Example life history file |
MakeAgePrior | Age Priors |
MkGenoErrors | Simulate Genotyping Errors |
PedCompare | Compare Two Pedigrees |
PedPolish | Fix Pedigree |
PedStripFID | Back-transform IDs |
Ped_griffin | Example pedigree: griffins |
Ped_HSg5 | Example pedigree |
PlotAgePrior | Plot Age Priors |
PlotPairLL | Plot Pair Log10-Likelihoods |
PlotPedComp | Visualise PedCompare Output |
PlotRelPairs | Plot Pairwise Relationships |
SeqOUT_griffin | Example sequoia output (griffins) |
sequoia | Pedigree Reconstruction |
SimGeno | Simulate Genotypes |
SimGeno_example | Example genotype file |
SnpStats | SNP Summary Statistics |
SummarySeq | Summarise Sequoia Output or Pedigree |
tryCatch.W.E | tryCatch both warnings (with value) and errors |
writeColumns | Write Data to a File Column-wise |
writeSeq | Write Sequoia Output to File |