Last updated on 2018-02-20 13:49:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.13 | 138.72 | 140.85 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 1.72 | 96.57 | 98.29 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 138.93 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 128.98 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.1.3 | 5.00 | 119.00 | 124.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.3 | 1.38 | 130.02 | 131.40 | ERROR | |
| r-patched-solaris-x86 | 0.1.3 | 206.40 | ERROR | |||
| r-release-linux-x86_64 | 0.1.3 | 2.01 | 129.86 | 131.87 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.1.3 | 11.00 | 166.00 | 177.00 | ERROR | |
| r-release-osx-x86_64 | 0.1.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.3 | 5.00 | 159.00 | 164.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.3 | OK |
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
── 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
══ testthat results ═══════════════════════════════════════════════════════════
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
── 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
══ testthat results ═══════════════════════════════════════════════════════════
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘IRanges’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘IRanges’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘fuzzyjoin-Ex.R’ failed
The error most likely occurred in:
> ### Name: genome_join
> ### Title: Join two tables based on overlapping genomic intervals: both a
> ### Aliases: genome_join genome_inner_join genome_left_join
> ### genome_right_join genome_full_join genome_semi_join genome_anti_join
>
> ### ** Examples
>
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> x1 <- data_frame(id1 = 1:4,
+ chromosome = c("chr1", "chr1", "chr2", "chr2"),
+ start = c(100, 200, 300, 400),
+ end = c(150, 250, 350, 450))
>
> x2 <- data_frame(id2 = 1:4,
+ chromosome = c("chr1", "chr2", "chr2", "chr1"),
+ start = c(140, 210, 400, 300),
+ end = c(160, 240, 415, 320))
>
> # note that the the third and fourth items don't join (even though
> # 300-350 and 300-320 overlap) since the chromosomes are different:
> genome_inner_join(x1, x2, by = c("chromosome", "start", "end"))
Error in genome_join(x, y, by, mode = "inner", ...) :
genome_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
Calls: genome_inner_join -> genome_join
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Error: Can join genomes on chromosomes and intervals (@test_genome_join.R#
genome_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: genome_inner_join(x1, x2, by = c("chromosome", "start", "end")) at testthat/test_genome_join.R:16
2: genome_join(x, y, by, mode = "inner", ...)
3: stop("genome_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 2. Error: Can inner join on intervals (@test_interval_join.R#12) ───────────
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, by = b1) at testthat/test_interval_join.R:12
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 3. Error: Can do non-inner joins on intervals (@test_interval_join.R#26) ───
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_left_join(x1, y1, by = b1) at testthat/test_interval_join.R:26
2: interval_join(x, y, by, mode = "left", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 4. Error: Can do inner joins on intervals with findOverlaps arguments (@test_
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, maxgap = 1) at testthat/test_interval_join.R:49
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 5. Error: Can join integer and double columns (@test_interval_join.R#59) ───
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, by = b1) at testthat/test_interval_join.R:59
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 6. Error: Can do inner joins on dates and datetimes (@test_interval_join.R#83
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x3, x4, by = b1) at testthat/test_interval_join.R:83
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 7. Failure: Joining non-compatible formats throws an error (@test_interval_jo
`interval_inner_join(x1, x3, by = b1)` threw an error with unexpected message.
Expected match: "Cannot join"
Actual message: "interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html"
── 8. Failure: Joining non-compatible formats throws an error (@test_interval_jo
`interval_inner_join(x4, x6, by = b1)` threw an error with unexpected message.
Expected match: "Cannot join"
Actual message: "interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html"
══ testthat results ═══════════════════════════════════════════════════════════
OK: 179 SKIPPED: 0 FAILED: 8
1. Error: Can join genomes on chromosomes and intervals (@test_genome_join.R#16)
2. Error: Can inner join on intervals (@test_interval_join.R#12)
3. Error: Can do non-inner joins on intervals (@test_interval_join.R#26)
4. Error: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#49)
5. Error: Can join integer and double columns (@test_interval_join.R#59)
6. Error: Can do inner joins on dates and datetimes (@test_interval_join.R#83)
7. Failure: Joining non-compatible formats throws an error (@test_interval_join.R#108)
8. Failure: Joining non-compatible formats throws an error (@test_interval_join.R#110)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/59s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Error: Can join genomes on chromosomes and intervals (@test_genome_join.R#
genome_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: genome_inner_join(x1, x2, by = c("chromosome", "start", "end")) at testthat/test_genome_join.R:16
2: genome_join(x, y, by, mode = "inner", ...)
3: stop("genome_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 2. Error: Can inner join on intervals (@test_interval_join.R#12) ───────────
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, by = b1) at testthat/test_interval_join.R:12
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 3. Error: Can do non-inner joins on intervals (@test_interval_join.R#26) ───
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_left_join(x1, y1, by = b1) at testthat/test_interval_join.R:26
2: interval_join(x, y, by, mode = "left", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 4. Error: Can do inner joins on intervals with findOverlaps arguments (@test_
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, maxgap = 1) at testthat/test_interval_join.R:49
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 5. Error: Can join integer and double columns (@test_interval_join.R#59) ───
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x1, y1, by = b1) at testthat/test_interval_join.R:59
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 6. Error: Can do inner joins on dates and datetimes (@test_interval_join.R#83
interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html
1: interval_inner_join(x3, x4, by = b1) at testthat/test_interval_join.R:83
2: interval_join(x, y, by, mode = "inner", ...)
3: stop("interval_join requires the IRanges package: ", "https://bioconductor.org/packages/release/bioc/html/IRanges.html")
── 7. Failure: Joining non-compatible formats throws an error (@test_interval_jo
`interval_inner_join(x1, x3, by = b1)` threw an error with unexpected message.
Expected match: "Cannot join"
Actual message: "interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html"
── 8. Failure: Joining non-compatible formats throws an error (@test_interval_jo
`interval_inner_join(x4, x6, by = b1)` threw an error with unexpected message.
Expected match: "Cannot join"
Actual message: "interval_join requires the IRanges package: https://bioconductor.org/packages/release/bioc/html/IRanges.html"
══ testthat results ═══════════════════════════════════════════════════════════
OK: 179 SKIPPED: 0 FAILED: 8
1. Error: Can join genomes on chromosomes and intervals (@test_genome_join.R#16)
2. Error: Can inner join on intervals (@test_interval_join.R#12)
3. Error: Can do non-inner joins on intervals (@test_interval_join.R#26)
4. Error: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#49)
5. Error: Can join integer and double columns (@test_interval_join.R#59)
6. Error: Can do inner joins on dates and datetimes (@test_interval_join.R#83)
7. Failure: Joining non-compatible formats throws an error (@test_interval_join.R#108)
8. Failure: Joining non-compatible formats throws an error (@test_interval_join.R#110)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3
Check: tests
Result: ERROR
Running 'testthat.R' [28s]
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
-- 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
-- 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
== testthat results ===========================================================
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [34s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
── 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
══ testthat results ═══════════════════════════════════════════════════════════
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
── 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
══ testthat results ═══════════════════════════════════════════════════════════
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fuzzyjoin)
>
> test_check("fuzzyjoin")
── 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
── 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
══ testthat results ═══════════════════════════════════════════════════════════
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3
Check: tests
Result: ERROR
Running 'testthat.R' [43s]
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
-- 1. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id1 not equal to c(1, 1, 2, 2, 3).
Lengths differ: 6 is not 5
-- 2. Failure: Can do inner joins on intervals with findOverlaps arguments (@tes
j_maxgap$id2 not equal to c(1, 2, 1, 2, 3).
Lengths differ: 6 is not 5
== testthat results ===========================================================
OK: 224 SKIPPED: 0 FAILED: 2
1. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#50)
2. Failure: Can do inner joins on intervals with findOverlaps arguments (@test_interval_join.R#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64