Last updated on 2018-02-20 08:48:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 7.17 | 53.98 | 61.15 | NOTE | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 6.29 | 46.50 | 52.79 | NOTE | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 83.76 | ERROR | --no-vignettes | ||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 74.91 | ERROR | --no-vignettes | ||
| r-devel-windows-ix86+x86_64 | 1.0.3 | 15.00 | 71.00 | 86.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 1.0.3 | 4.73 | 58.80 | 63.53 | NOTE | --no-vignettes |
| r-patched-solaris-x86 | 1.0.3 | 117.90 | OK | --no-vignettes | ||
| r-release-linux-x86_64 | 1.0.3 | 4.62 | 59.81 | 64.43 | NOTE | --no-vignettes |
| r-release-windows-ix86+x86_64 | 1.0.3 | 16.00 | 99.00 | 115.00 | OK | --no-vignettes |
| r-release-osx-x86_64 | 1.0.3 | FAIL | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.3 | 12.00 | 105.00 | 117.00 | OK | --no-vignettes |
| r-oldrel-osx-x86_64 | 1.0.3 | FAIL |
Version: 1.0.3
Flags: --no-vignettes
Check: pragmas in C/C++ headers and code
Result: NOTE
File which contains pragma(s) suppressing diagnostics:
‘src/includes/do_cumsum.h’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 1.0.3
Flags: --no-vignettes
Check: compiled code
Result: NOTE
File ‘ordinalgmifs/libs/ordinalgmifs.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.3
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Biobase’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Flags: --no-vignettes
Check: for missing documentation entries
Result: ERROR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘Biobase’
Error in .requirePackage(package) :
unable to find required package ‘Biobase’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Flags: --no-vignettes
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'Biobase'
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Biobase’
Flavor: r-release-osx-x86_64
Version: 1.0.3
Check: for missing documentation entries
Result: ERROR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘Biobase’
Error in .requirePackage(package) :
unable to find required package ‘Biobase’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0.3
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'Biobase'
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0.3
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘ordinalgmifs.Rnw’
...
Loading required package: survival
> data(hccframe)
> cumulative.logit <- ordinal.gmifs(group ~ 1, x = hccframe[,
+ -1], data = hccframe)
Execution halted
... incomplete output. Crash?
Flavor: r-release-osx-x86_64
Version: 1.0.3
Check: PDF version of manual
Result: FAIL
Flavor: r-release-osx-x86_64
Version: 1.0.3
Check: for missing documentation entries
Result: WARN
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-osx-x86_64
Version: 1.0.3
Check: running R code from vignettes
Result: FAIL
Flavor: r-oldrel-osx-x86_64