CRAN Package Check Results for Package Stickbreaker

Last updated on 2018-05-09 22:49:00 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.0	2.09	471.72	473.81	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.0	1.82	299.82	301.64	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.0			507.00	NOTE
r-devel-linux-x86_64-fedora-gcc	1.0.0			496.92	NOTE
r-devel-windows-ix86+x86_64	1.0.0	8.00	544.00	552.00	OK
r-patched-linux-x86_64	1.0.0	2.38	450.96	453.34	ERROR
r-patched-solaris-x86	1.0.0			554.70	NOTE
r-release-linux-x86_64	1.0.0	3.30	454.24	457.54	ERROR
r-release-windows-ix86+x86_64	1.0.0	8.00	544.00	552.00	OK
r-release-osx-x86_64	1.0.0				NOTE
r-oldrel-windows-ix86+x86_64	1.0.0	6.00	452.00	458.00	OK
r-oldrel-osx-x86_64	1.0.0				NOTE

Check Details

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘Stickbreaker-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: sim.data.from.priors.for.mod.selection
    > ### Title: Simulate data from priors for doing model selection
    > ### Aliases: sim.data.from.priors.for.mod.selection
    >
    > ### ** Examples
    >
    > n.muts <- 4
    > n.muts <- length(Khan.data[1,])-1
    > geno.matrix <- Khan.data[,seq(1, n.muts)]
    > fit.matrix <- as.matrix(Khan.data[,(n.muts+1)])
    > outdir <- system.file("extdata",package="Stickbreaker")
    > file.name <- paste("Training_simulated_priors_fit_data_", n.muts, "muts.txt", sep="")
    > outpath <- paste(outdir, file.name, sep="/")
    > sim.data.from.priors.for.mod.selection(n.muts,
    + c(0.05, 0.5),
    + c(0, 0.25),
    + c(4),
    + 1,
    + c(0.1, 10),
    + 1.1,
    + 1,
    + c(2,1),
    + outpath,
    + 50,
    + coe.sim.model="identical",
    + coe.dist.par=NA,
    + print.interval=NA)
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Stickbreaker/extdata/Training_simulated_priors_fit_data_5muts.txt': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: sim.data.from.priors.for.mod.selection -> write.table -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘Stickbreaker-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: sim.data.from.priors.for.mod.selection
    > ### Title: Simulate data from priors for doing model selection
    > ### Aliases: sim.data.from.priors.for.mod.selection
    >
    > ### ** Examples
    >
    > n.muts <- 4
    > n.muts <- length(Khan.data[1,])-1
    > geno.matrix <- Khan.data[,seq(1, n.muts)]
    > fit.matrix <- as.matrix(Khan.data[,(n.muts+1)])
    > outdir <- system.file("extdata",package="Stickbreaker")
    > file.name <- paste("Training_simulated_priors_fit_data_", n.muts, "muts.txt", sep="")
    > outpath <- paste(outdir, file.name, sep="/")
    > sim.data.from.priors.for.mod.selection(n.muts,
    + c(0.05, 0.5),
    + c(0, 0.25),
    + c(4),
    + 1,
    + c(0.1, 10),
    + 1.1,
    + 1,
    + c(2,1),
    + outpath,
    + 50,
    + coe.sim.model="identical",
    + coe.dist.par=NA,
    + print.interval=NA)
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Stickbreaker/extdata/Training_simulated_priors_fit_data_5muts.txt': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: sim.data.from.priors.for.mod.selection -> write.table -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘lattice’ ‘xtable’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Dependence on R version ‘3.3.1’ not with patchlevel 0
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘Stickbreaker-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: sim.data.from.priors.for.mod.selection
    > ### Title: Simulate data from priors for doing model selection
    > ### Aliases: sim.data.from.priors.for.mod.selection
    >
    > ### ** Examples
    >
    > n.muts <- 4
    > n.muts <- length(Khan.data[1,])-1
    > geno.matrix <- Khan.data[,seq(1, n.muts)]
    > fit.matrix <- as.matrix(Khan.data[,(n.muts+1)])
    > outdir <- system.file("extdata",package="Stickbreaker")
    > file.name <- paste("Training_simulated_priors_fit_data_", n.muts, "muts.txt", sep="")
    > outpath <- paste(outdir, file.name, sep="/")
    > sim.data.from.priors.for.mod.selection(n.muts,
    + c(0.05, 0.5),
    + c(0, 0.25),
    + c(4),
    + 1,
    + c(0.1, 10),
    + 1.1,
    + 1,
    + c(2,1),
    + outpath,
    + 50,
    + coe.sim.model="identical",
    + coe.dist.par=NA,
    + print.interval=NA)
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Stickbreaker/extdata/Training_simulated_priors_fit_data_5muts.txt': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: sim.data.from.priors.for.mod.selection -> write.table -> file
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘Stickbreaker-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: sim.data.from.priors.for.mod.selection
    > ### Title: Simulate data from priors for doing model selection
    > ### Aliases: sim.data.from.priors.for.mod.selection
    >
    > ### ** Examples
    >
    > n.muts <- 4
    > n.muts <- length(Khan.data[1,])-1
    > geno.matrix <- Khan.data[,seq(1, n.muts)]
    > fit.matrix <- as.matrix(Khan.data[,(n.muts+1)])
    > outdir <- system.file("extdata",package="Stickbreaker")
    > file.name <- paste("Training_simulated_priors_fit_data_", n.muts, "muts.txt", sep="")
    > outpath <- paste(outdir, file.name, sep="/")
    > sim.data.from.priors.for.mod.selection(n.muts,
    + c(0.05, 0.5),
    + c(0, 0.25),
    + c(4),
    + 1,
    + c(0.1, 10),
    + 1.1,
    + 1,
    + c(2,1),
    + outpath,
    + 50,
    + coe.sim.model="identical",
    + coe.dist.par=NA,
    + print.interval=NA)
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Stickbreaker/extdata/Training_simulated_priors_fit_data_5muts.txt': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: sim.data.from.priors.for.mod.selection -> write.table -> file
    Execution halted
Flavor: r-release-linux-x86_64