CRAN Package Check Results for Package tcpl

Last updated on 2018-05-09 22:49:01 CEST.

Check Details

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘tcpl-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: Method functions
    > ### Title: Functions for managing processing methods
    > ### Aliases: 'Method functions' tcplMthdAssign tcplMthdClear tcplMthdList
    > ### tcplMthdLoad
    >
    > ### ** Examples
    >
    > ## Store the current config settings, so they can be reloaded at the end
    > ## of the examples
    > conf_store <- tcplConfList()
    > tcplConfDefault()
    >
    > ## tcplListMthd allows the user to display the available methods for
    > ## a given level and data type
    > head(tcplMthdList(lvl = 2, type = "mc"))
     mc2_mthd_id mc2_mthd desc
    1: 1 none apply no level 2 method
    2: 2 log2 log2 all raw data
    3: 3 rmneg remove negative values prior to logging values
    4: 4 rmzero remove 0 values prior to logging values
    5: 5 mult25 multiply values by 25
    6: 7 mult100 multiply values by 100
    >
    > ## tcplLoadMthd shows which methods are assigned for the given ID, level,
    > ## and data type. Here we will show how to register, load, and clear methods
    > ## using an acid not in the example database. Note: There is no check for
    > ## whether an ID exists before assigning/clearing methods.
    > tcplMthdLoad(lvl = 2, id = 55, type = "mc")
    Warning in tcplMthdLoad(lvl = 2, id = 55, type = "mc") :
     The given id(s) do not have mc2 methods.
    Empty data.table (0 rows) of 4 cols: acid,mthd,mthd_id,ordr
    >
    > ## ACID 55 does not have any methods. Assign methods from the list above.
    > tcplMthdAssign(lvl = 2,
    + id = 55,
    + mthd_id = c(3, 4, 2),
    + ordr = 1:3,
    + type = "mc")
    Warning in `[.data.table`(dat, , `:=`("exec_ordr", ordr[match(get("mthd"), :
     with=FALSE ignored, it isn't needed when using :=. See ?':=' for examples.
    Warning in `[.data.table`(dat, , `:=`("modified_by", mb), with = FALSE) :
     with=FALSE ignored, it isn't needed when using :=. See ?':=' for examples.
    Error in result_create(conn@ptr, statement) :
     attempt to write a readonly database
    Calls: tcplMthdAssign ... .local -> new -> initialize -> initialize -> result_create
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: data.table
    No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘tcpl’
    tcpl (v1.2.2) loaded with the following settings:
     TCPL_DB: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/tcpl/sql/tcpldb.sqlite
     TCPL_USER: NA
     TCPL_HOST: NA
     TCPL_DRVR: SQLite
    Default settings stored in TCPL.conf. See ?tcplConf for more information.
    
    Error: processing vignette ‘tcpl_Overview.Rnw’ failed with diagnostics:
     chunk 4
    Error in result_create(conn@ptr, statement) :
     attempt to write a readonly database
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: data.table
    No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘tcpl’
    tcpl (v1.2.2) loaded with the following settings:
     TCPL_DB: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tcpl/sql/tcpldb.sqlite
     TCPL_USER: NA
     TCPL_HOST: NA
     TCPL_DRVR: SQLite
    Default settings stored in TCPL.conf. See ?tcplConf for more information.
    
    Error: processing vignette ‘tcpl_Overview.Rnw’ failed with diagnostics:
     chunk 4
    Error in result_create(conn@ptr, statement) :
     attempt to write a readonly database
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.2
Check: installed package size
Result: NOTE
     installed size is 10.0Mb
     sub-directories of 1Mb or more:
     sql 8.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: data.table
    No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘tcpl’
    tcpl (v1.2.2) loaded with the following settings:
     TCPL_DB: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/tcpl/sql/tcpldb.sqlite
     TCPL_USER: NA
     TCPL_HOST: NA
     TCPL_DRVR: SQLite
    Default settings stored in TCPL.conf. See ?tcplConf for more information.
    
    Error: processing vignette ‘tcpl_Overview.Rnw’ failed with diagnostics:
     chunk 4
    Error in result_create(conn@ptr, statement) :
     attempt to write a readonly database
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: data.table
    No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘tcpl’
    tcpl (v1.2.2) loaded with the following settings:
     TCPL_DB: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/tcpl/sql/tcpldb.sqlite
     TCPL_USER: NA
     TCPL_HOST: NA
     TCPL_DRVR: SQLite
    Default settings stored in TCPL.conf. See ?tcplConf for more information.
    
    Error: processing vignette ‘tcpl_Overview.Rnw’ failed with diagnostics:
     chunk 4
    Error in result_create(conn@ptr, statement) :
     attempt to write a readonly database
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.2.2
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘tcpl_Overview.Rnw’
     ...
    Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null.
    Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null.
    OMP: Error #13: Assertion failure at kmp_runtime.cpp(6480).
    OMP: Hint: Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see http://www.intel.com/software/products/support/.
    OMP: Error #13: Assertion failure at kmp_runtime.cpp(6480).
    OMP: Hint: Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see http://www.intel.com/software/products/support/.
    
     When sourcing ‘tcpl_Overview.R’:
    Error: argument to 'which' is not logical
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning: Closing open result set, pending rows
    Warning: Closing open result set, pending rows
    Warning: Closing open result set, pending rows
    Warning: Closing open result set, pending rows
    Warning in `[.data.table`(dat, , `:=`(c("tmpi", fitpars), c(.GRP, tcplFit(logc = logc, :
     with=FALSE ignored, it isn't needed when using :=. See ?':=' for examples.
    Warning in `[.data.table`(dat, , `:=`(c("tmpi", fitpars), c(.GRP, tcplFit(logc = logc, :
     with=FALSE ignored, it isn't needed when using :=. See ?':=' for examples.
    Warning in `[.data.table`(dat, , `:=`(aic_probs, tcplAICProb(cnst_aic, hill_aic, :
     with=FALSE together with := was deprecated in v1.9.4 released Oct 2014. Please wrap the LHS of := with parentheses; e.g., DT[,(myVar):=sum(b),by=a] to assign to column name(s) held in variable myVar. See ?':=' for other examples. As warned in 2014, this is now a warning.
    Warning in `[.data.table`(dat, , `:=`(aic_probs, tcplAICProb(cnst_aic, hill_aic, :
     with=FALSE together with := was deprecated in v1.9.4 released Oct 2014. Please wrap the LHS of := with parentheses; e.g., DT[,(myVar):=sum(b),by=a] to assign to column name(s) held in variable myVar. See ?':=' for other examples. As warned in 2014, this is now a warning.
    Warning: Closing open result set, pending rows
    Warning: Closing open result set, pending rows
    Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null.
    OMP: Error #13: Assertion failure at kmp_runtime.cpp(6480).
    OMP: Hint: Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see http://www.intel.com/software/products/support/.
    Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null.
    OMP: Error #13: Assertion failure at kmp_runtime.cpp(6480).
    OMP: Hint: Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see http://www.intel.com/software/products/support/.
    
    Error: processing vignette 'tcpl_Overview.Rnw' failed with diagnostics:
     chunk 35
    Error in which(x) : argument to 'which' is not logical
    Execution halted
Flavor: r-oldrel-osx-x86_64