CRAN Package Check Results for Package pulsar

Last updated on 2018-05-17 10:46:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.2 5.23 299.65 304.88 ERROR
r-devel-linux-x86_64-debian-gcc 0.3.2 4.65 275.98 280.63 ERROR
r-devel-linux-x86_64-fedora-clang 0.3.2 394.85 OK
r-devel-linux-x86_64-fedora-gcc 0.3.2 387.40 OK
r-devel-windows-ix86+x86_64 0.3.2 9.00 330.00 339.00 ERROR
r-patched-linux-x86_64 0.3.2 4.50 320.43 324.93 ERROR
r-patched-solaris-x86 0.3.2 530.70 OK
r-release-linux-x86_64 0.3.2 4.09 313.75 317.84 ERROR
r-release-windows-ix86+x86_64 0.3.2 12.00 329.00 341.00 OK
r-release-osx-x86_64 0.3.2 OK
r-oldrel-windows-ix86+x86_64 0.3.2 10.00 285.00 295.00 OK
r-oldrel-osx-x86_64 0.3.2 OK

Check Details

Version: 0.3.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [70s/70s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > suppressPackageStartupMessages(library(testthat))
     > suppressPackageStartupMessages(library(pulsar))
     >
     > testthat::test_check("pulsar")
     ── 1. Failure: default config files are in search path (@test_batchtools.R#34)
     basename(conf) not equivalent to `name`.
     1/1 mismatches
     x[1]: ".batchtools.conf.R"
     y[1]: "batchtools.conf.R"
    
     ── 2. Failure: default config files are in search path (@test_batchtools.R#34)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pulsar/config"
    
     ── 3. Failure: default config files are in search path (@test_batchtools.R#35)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 4. Failure: default config files are in search path (@test_batchtools.R#35)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 5. Failure: default config files are in search path (@test_batchtools.R#36)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 6. Failure: default config files are in search path (@test_batchtools.R#36)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 7. Failure: default config files are in search path (@test_batchtools.R#37)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 8. Failure: default config files are in search path (@test_batchtools.R#37)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 9. Failure: default config files are in search path (@test_batchtools.R#45)
     length(batchtools:::findConfFile()) not equivalent to 0.
     1/1 mismatches
     [1] 1 - 0 == 1
    
     ── 10. Error: default config files are in search path (@test_batchtools.R#47) ─
     unused argument (check.attributes = FALSE)
     1: conftestbt(conf5) at testthat/test_batchtools.R:47
     2: expect_equivalent(batchtools:::findConfFile(), conf) at testthat/test_batchtools.R:22
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 11. Failure: default template files are in the search path (@test_batchtools.
     basename(tmpl1) not equivalent to paste0(base, ".tmpl").
     1/1 mismatches
     x[1]: ".batchtools.simpletorque.tmpl"
     y[1]: "simpletorque.tmpl"
    
     ── 12. Failure: default template files are in the search path (@test_batchtools.
     dirname(tmpl1) not equivalent to system.file("templates", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pulsar/templat
     y[1]: es"
    
     ── 13. Error: default template files are in the search path (@test_batchtools.R#
     unused argument (check.attributes = FALSE)
     1: templtestbt(tmpl3) at testthat/test_batchtools.R:88
     2: expect_equivalent(pulsar::findTemplateFile(name), templ) at testthat/test_batchtools.R:64
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 14. Error: batch.pulsar options (@test_batchtools.R#118) ───────────────────
     unused argument (check.attributes = FALSE)
     1: expect_equivalent(est$init.reg$work.dir, homedir) at testthat/test_batchtools.R:118
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 146 SKIPPED: 0 FAILED: 14
     1. Failure: default config files are in search path (@test_batchtools.R#34)
     2. Failure: default config files are in search path (@test_batchtools.R#34)
     3. Failure: default config files are in search path (@test_batchtools.R#35)
     4. Failure: default config files are in search path (@test_batchtools.R#35)
     5. Failure: default config files are in search path (@test_batchtools.R#36)
     6. Failure: default config files are in search path (@test_batchtools.R#36)
     7. Failure: default config files are in search path (@test_batchtools.R#37)
     8. Failure: default config files are in search path (@test_batchtools.R#37)
     9. Failure: default config files are in search path (@test_batchtools.R#45)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [62s/94s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > suppressPackageStartupMessages(library(testthat))
     > suppressPackageStartupMessages(library(pulsar))
     >
     > testthat::test_check("pulsar")
     ── 1. Failure: default config files are in search path (@test_batchtools.R#34)
     basename(conf) not equivalent to `name`.
     1/1 mismatches
     x[1]: ".batchtools.conf.R"
     y[1]: "batchtools.conf.R"
    
     ── 2. Failure: default config files are in search path (@test_batchtools.R#34)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pulsar/config"
    
     ── 3. Failure: default config files are in search path (@test_batchtools.R#35)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 4. Failure: default config files are in search path (@test_batchtools.R#35)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 5. Failure: default config files are in search path (@test_batchtools.R#36)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 6. Failure: default config files are in search path (@test_batchtools.R#36)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 7. Failure: default config files are in search path (@test_batchtools.R#37)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 8. Failure: default config files are in search path (@test_batchtools.R#37)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 9. Failure: default config files are in search path (@test_batchtools.R#45)
     length(batchtools:::findConfFile()) not equivalent to 0.
     1/1 mismatches
     [1] 1 - 0 == 1
    
     ── 10. Error: default config files are in search path (@test_batchtools.R#47) ─
     unused argument (check.attributes = FALSE)
     1: conftestbt(conf5) at testthat/test_batchtools.R:47
     2: expect_equivalent(batchtools:::findConfFile(), conf) at testthat/test_batchtools.R:22
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 11. Failure: default template files are in the search path (@test_batchtools.
     basename(tmpl1) not equivalent to paste0(base, ".tmpl").
     1/1 mismatches
     x[1]: ".batchtools.simpletorque.tmpl"
     y[1]: "simpletorque.tmpl"
    
     ── 12. Failure: default template files are in the search path (@test_batchtools.
     dirname(tmpl1) not equivalent to system.file("templates", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pulsar/templates
     y[1]: "
    
     ── 13. Error: default template files are in the search path (@test_batchtools.R#
     unused argument (check.attributes = FALSE)
     1: templtestbt(tmpl3) at testthat/test_batchtools.R:88
     2: expect_equivalent(pulsar::findTemplateFile(name), templ) at testthat/test_batchtools.R:64
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 14. Error: batch.pulsar options (@test_batchtools.R#118) ───────────────────
     unused argument (check.attributes = FALSE)
     1: expect_equivalent(est$init.reg$work.dir, homedir) at testthat/test_batchtools.R:118
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 146 SKIPPED: 0 FAILED: 14
     1. Failure: default config files are in search path (@test_batchtools.R#34)
     2. Failure: default config files are in search path (@test_batchtools.R#34)
     3. Failure: default config files are in search path (@test_batchtools.R#35)
     4. Failure: default config files are in search path (@test_batchtools.R#35)
     5. Failure: default config files are in search path (@test_batchtools.R#36)
     6. Failure: default config files are in search path (@test_batchtools.R#36)
     7. Failure: default config files are in search path (@test_batchtools.R#37)
     8. Failure: default config files are in search path (@test_batchtools.R#37)
     9. Failure: default config files are in search path (@test_batchtools.R#45)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3.2
Check: tests
Result: ERROR
     Running 'testthat.R' [38s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > suppressPackageStartupMessages(library(testthat))
     > suppressPackageStartupMessages(library(pulsar))
     >
     > testthat::test_check("pulsar")
     -- 1. Error: default config files are in search path (@test_batchtools.R#47) --
     [ENOENT] Failed to realize 'C:/Users/CRAN/.batchtools.conf.R': no such file or directory
     1: conftestbt(conf5) at testthat/test_batchtools.R:47
     2: expect_equivalent(batchtools:::findConfFile(), conf) at testthat/test_batchtools.R:22
     3: quasi_label(enquo(object), label)
     4: eval_bare(get_expr(quo), get_env(quo))
     5: batchtools:::findConfFile()
     6: fs::path_real(x)
     7: realize_(old[!is_missing])
    
     -- 2. Failure: default template files are in the search path (@test_batchtools.R
     pulsar::findTemplateFile(name) not equivalent to `templ`.
     1/1 mismatches
     x[1]: "D:/temp/RtmporN01A/RLIBS_41b81f2930e2/pulsar/templates/simpletorque.tmpl"
     y[1]: "C:/Users/CRAN/Documents/.batchtools.simpletorque.tmpl"
    
     -- 3. Error: default template files are in the search path (@test_batchtools.R#9
     unused argument (check.attributes = FALSE)
     1: templtestbt(tmpl4) at testthat/test_batchtools.R:92
     2: expect_equivalent(pulsar::findTemplateFile(name), templ) at testthat/test_batchtools.R:64
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     -- 4. Error: batch.pulsar options (@test_batchtools.R#113) --------------------
     [ENOENT] Failed to realize 'C:/Users/CRAN/.batchtools.conf.R': no such file or directory
     1: suppressWarnings(est <- batch.pulsar(dat$data, huge::huge, fargs, rep.num = 3, lb.stars = TRUE,
     wkdir = homedir)) at testthat/test_batchtools.R:113
     2: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     3: batch.pulsar(dat$data, huge::huge, fargs, rep.num = 3, lb.stars = TRUE, wkdir = homedir)
     4: findConfFile(conffile)
     5: getFromNamespace("findConfFile", "batchtools")()
     6: fs::path_real(x)
     7: realize_(old[!is_missing])
    
     -- 5. Error: weird lambda path results in correct error or warning ------------
     [ENOENT] Failed to realize 'C:/Users/CRAN/.batchtools.conf.R': no such file or directory
     1: expect_warning(out <- pfun(dat$data, fun = fun, fargs = hargs, rep.num = 2, ...),
     "lambda path")
     2: quasi_capture(enquo(object), capture_warnings, label = label)
     3: capture(act$val <- eval_bare(get_expr(quo), get_env(quo)))
     4: withCallingHandlers(code, warning = function(condition) {
     out$push(condition)
     invokeRestart("muffleWarning")
     })
     5: eval_bare(get_expr(quo), get_env(quo))
     6: pfun(dat$data, fun = fun, fargs = hargs, rep.num = 2, ...)
     7: findConfFile(conffile)
     8: getFromNamespace("findConfFile", "batchtools")()
     9: fs::path_real(x)
     10: realize_(old[!is_missing])
    
     -- 6. Error: (unknown) (@test_pulsar.R#31) ------------------------------------
     [ENOENT] Failed to realize 'C:/Users/CRAN/.batchtools.conf.R': no such file or directory
     1: runtests(batch.pulsar, "batch.pulsar", dat, fun = huge::huge, fargs = list(verbose = FALSE,
     scr = TRUE), conffile = conffile, cleanup = TRUE, seed = rseed, wkdir = homedir) at testthat/test_pulsar.R:31
     2: pfun(dat$data, fun = fun, fargs = hargs, criterion = "stars", rep.num = 6, ...)
     3: findConfFile(conffile)
     4: getFromNamespace("findConfFile", "batchtools")()
     5: fs::path_real(x)
     6: realize_(old[!is_missing])
    
     == testthat results ===========================================================
     OK: 70 SKIPPED: 0 FAILED: 6
     1. Error: default config files are in search path (@test_batchtools.R#47)
     2. Failure: default template files are in the search path (@test_batchtools.R#88)
     3. Error: default template files are in the search path (@test_batchtools.R#92)
     4. Error: batch.pulsar options (@test_batchtools.R#113)
     5. Error: weird lambda path results in correct error or warning
     6. Error: (unknown) (@test_pulsar.R#31)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.3.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    No optimal index selected for diss criterion
    <sparse>[ <logic> ] : .M.sub.i.logical() maybe inefficient
    <sparse>[ <logic> ] : .M.sub.i.logical() maybe inefficient
    network: Classes for Relational Data
    Version 1.13.0.1 created on 2015-08-31.
    copyright (c) 2005, Carter T. Butts, University of California-Irvine
     Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Martina Morris, University of Washington
     Skye Bender-deMoll, University of Washington
     For citation information, type citation("network").
     Type help("network-package") to get started.
    
    
    Attaching package: 'network'
    
    The following objects are masked from 'package:igraph':
    
     %c%, %s%, add.edges, add.vertices, delete.edges,
     delete.vertices, get.edge.attribute, get.edges,
     get.vertex.attribute, is.bipartite, is.directed,
     list.edge.attributes, list.vertex.attributes,
     set.edge.attribute, set.vertex.attribute
    
    <sparse>[ <logic> ] : .M.sub.i.logical() maybe inefficient
    Quitting from lines 176-177 (D:/temp/RtmporN01A/RLIBS_41b82cd4583/pulsar/CONTENT.Rmd)
    Quitting from lines 44-49 (D:/temp/RtmporN01A/RLIBS_41b82cd4583/pulsar/CONTENT.Rmd)
    Error: processing vignette 'pulsar.Rmd' failed with diagnostics:
    [ENOENT] Failed to realize 'C:/Users/CRAN/.batchtools.conf.R': no such file or directory
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.3.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [69s/89s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > suppressPackageStartupMessages(library(testthat))
     > suppressPackageStartupMessages(library(pulsar))
     >
     > testthat::test_check("pulsar")
     ── 1. Failure: default config files are in search path (@test_batchtools.R#34)
     basename(conf) not equivalent to `name`.
     1/1 mismatches
     x[1]: ".batchtools.conf.R"
     y[1]: "batchtools.conf.R"
    
     ── 2. Failure: default config files are in search path (@test_batchtools.R#34)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pulsar/config"
    
     ── 3. Failure: default config files are in search path (@test_batchtools.R#35)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 4. Failure: default config files are in search path (@test_batchtools.R#35)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 5. Failure: default config files are in search path (@test_batchtools.R#36)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 6. Failure: default config files are in search path (@test_batchtools.R#36)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 7. Failure: default config files are in search path (@test_batchtools.R#37)
     basename(conf) not equivalent to `name`.
     Lengths differ: 0 is not 1
    
     ── 8. Failure: default config files are in search path (@test_batchtools.R#37)
     dirname(conf) not equivalent to system.file("config", package = "pulsar").
     Lengths differ: 0 is not 1
    
     ── 9. Failure: default config files are in search path (@test_batchtools.R#45)
     length(batchtools:::findConfFile()) not equivalent to 0.
     1/1 mismatches
     [1] 1 - 0 == 1
    
     ── 10. Error: default config files are in search path (@test_batchtools.R#47) ─
     unused argument (check.attributes = FALSE)
     1: conftestbt(conf5) at testthat/test_batchtools.R:47
     2: expect_equivalent(batchtools:::findConfFile(), conf) at testthat/test_batchtools.R:22
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 11. Failure: default template files are in the search path (@test_batchtools.
     basename(tmpl1) not equivalent to paste0(base, ".tmpl").
     1/1 mismatches
     x[1]: ".batchtools.simpletorque.tmpl"
     y[1]: "simpletorque.tmpl"
    
     ── 12. Failure: default template files are in the search path (@test_batchtools.
     dirname(tmpl1) not equivalent to system.file("templates", package = "pulsar").
     1/1 mismatches
     x[1]: "/home/hornik"
     y[1]: "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pulsar/templat
     y[1]: es"
    
     ── 13. Error: default template files are in the search path (@test_batchtools.R#
     unused argument (check.attributes = FALSE)
     1: templtestbt(tmpl3) at testthat/test_batchtools.R:88
     2: expect_equivalent(pulsar::findTemplateFile(name), templ) at testthat/test_batchtools.R:64
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 14. Error: batch.pulsar options (@test_batchtools.R#118) ───────────────────
     unused argument (check.attributes = FALSE)
     1: expect_equivalent(est$init.reg$work.dir, homedir) at testthat/test_batchtools.R:118
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 146 SKIPPED: 0 FAILED: 14
     1. Failure: default config files are in search path (@test_batchtools.R#34)
     2. Failure: default config files are in search path (@test_batchtools.R#34)
     3. Failure: default config files are in search path (@test_batchtools.R#35)
     4. Failure: default config files are in search path (@test_batchtools.R#35)
     5. Failure: default config files are in search path (@test_batchtools.R#36)
     6. Failure: default config files are in search path (@test_batchtools.R#36)
     7. Failure: default config files are in search path (@test_batchtools.R#37)
     8. Failure: default config files are in search path (@test_batchtools.R#37)
     9. Failure: default config files are in search path (@test_batchtools.R#45)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.3.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [68s/88s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > suppressPackageStartupMessages(library(testthat))
     > suppressPackageStartupMessages(library(pulsar))
     >
     > testthat::test_check("pulsar")
     ── 1. Error: default config files are in search path (@test_batchtools.R#47) ──
     unused argument (check.attributes = FALSE)
     1: conftestbt(conf5) at testthat/test_batchtools.R:47
     2: expect_equivalent(batchtools:::findConfFile(), conf) at testthat/test_batchtools.R:22
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 2. Error: default template files are in the search path (@test_batchtools.R#8
     unused argument (check.attributes = FALSE)
     1: templtestbt(tmpl3) at testthat/test_batchtools.R:88
     2: expect_equivalent(pulsar::findTemplateFile(name), templ) at testthat/test_batchtools.R:64
     3: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ── 3. Error: batch.pulsar options (@test_batchtools.R#118) ────────────────────
     unused argument (check.attributes = FALSE)
     1: expect_equivalent(est$init.reg$work.dir, homedir) at testthat/test_batchtools.R:118
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 157 SKIPPED: 0 FAILED: 3
     1. Error: default config files are in search path (@test_batchtools.R#47)
     2. Error: default template files are in the search path (@test_batchtools.R#88)
     3. Error: batch.pulsar options (@test_batchtools.R#118)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64