CRAN Package Check Results for Package freqMAP

Last updated on 2018-06-09 21:47:51 CEST.

Check Details

Version: 0.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.freqMAP print.freqMAP summary.freqMAP
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    add.p.value.legend: no visible global function definition for ‘legend’
    cat.freq.post: no visible global function definition for ‘quantile’
    draw.signif.post.boxes: no visible global function definition for
     ‘polygon’
    plot.freqMAP: no visible global function definition for ‘layout’
    plot.freqMAP: no visible global function definition for ‘plot’
    plot.freqMAP: no visible global function definition for ‘points’
    plot.freqMAP: no visible global function definition for ‘lines’
    plot.freqMAP: no visible global function definition for ‘abline’
    plot.freqMAP: no visible global function definition for ‘axTicks’
    posterior.comparison.freqMAP: no visible global function definition for
     ‘quantile’
    rdirichlet: no visible global function definition for ‘rgamma’
    Undefined global functions or variables:
     abline axTicks layout legend lines plot points polygon quantile
     rgamma
    Consider adding
     importFrom("graphics", "abline", "axTicks", "layout", "legend",
     "lines", "plot", "points", "polygon")
     importFrom("stats", "quantile", "rgamma")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2
Check: examples
Result: ERROR
    Running examples in ‘freqMAP-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: freqMAP-package
    > ### Title: Frequency Moving Average Plots (MAP) of Multinomial Data by a
    > ### Continuous Covariate
    > ### Aliases: freqMAP-package
    > ### Keywords: package htest models multivariate smooth
    >
    > ### ** Examples
    >
    >
    > data("genotypebyage")
    >
    > ####An analysis by genotype
    >
    > #Create a freqMAP object for probands and controls, respectively.
    > fm.cont <- freqMAP(genotypebyage[genotypebyage$subject.type=="control",c("age","genotype")],
    + x=seq(25,95,by=5),x.label="age",hw=5)
    > fm.prob <- freqMAP(genotypebyage[genotypebyage$subject.type=="proband",c("age","genotype")],
    + x=seq(25,95,by=5),x.label="age",hw=5)
    >
    > #Plot the two MAPs overlaid.
    > plot(fm.cont,fm.prob,legend=c("controls","probands"),show.p.value.legend=TRUE)
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     (list) object cannot be coerced to type 'double'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64