Last updated on 2018-06-16 06:47:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-5 | 6.10 | 57.58 | 63.68 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1-5 | 4.98 | 47.84 | 52.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1-5 | 74.75 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-5 | 73.71 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1-5 | 11.00 | 119.00 | 130.00 | OK | |
| r-patched-linux-x86_64 | 1.1-5 | 5.34 | 50.45 | 55.79 | OK | |
| r-patched-solaris-x86 | 1.1-5 | 109.90 | OK | |||
| r-release-linux-x86_64 | 1.1-5 | 5.12 | 49.88 | 55.00 | OK | |
| r-release-windows-ix86+x86_64 | 1.1-5 | 17.00 | 79.00 | 96.00 | OK | |
| r-release-osx-x86_64 | 1.1-5 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1-5 | 12.00 | 74.00 | 86.00 | OK | |
| r-oldrel-osx-x86_64 | 1.1-5 | OK |
Version: 1.1-5
Check: examples
Result: ERROR
Running examples in ‘tranSurv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tranSurvfit
> ### Title: This function creates survival curves under dependent truncation
> ### and independent censoring via a structural transformation model.
> ### Aliases: tranSurvfit
>
> ### ** Examples
>
> ## Generate simulated data from a transformation model
> datgen <- function(n) {
+ a <- -0.3
+ X <- rweibull(n, 2, 4) ## failure times
+ U <- rweibull(n, 2, 1) ## latent truncation time
+ T <- (1 + a) * U - a * X ## apply transformation
+ C <- rlnorm(n, .8, 1) ## censoring
+ dat <- data.frame(trun = T, obs = pmin(X, C), delta = 1 * (X <= C))
+ return(subset(dat, trun <= obs))
+ }
>
> set.seed(123)
> dat <- datgen(300)
> fit <- with(dat, tranSurvfit(trun, obs, delta))
> fit
Fitting structural transformation model
Call: tranSurvfit(trun = trun, obs = obs, delta = delta)
Conditional Kendall's tau = 0.5212 , p-value = 0
Restricted inverse probability weighted Kendall's tau = 0.5057 , p-value = 2e-04
Transformation parameter by minimizing absolute value of Kendall's tau: -1
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8929
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8572
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8215
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7858
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7501
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7144
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6787
Transformation parameter by minimizing absolute value of Kendall's tau: -0.643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6073
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5716
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5359
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5002
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4645
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4288
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3931
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3574
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3217
Transformation parameter by minimizing absolute value of Kendall's tau: -0.286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2503
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2146
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1789
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1432
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1075
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0718
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0361
Transformation parameter by minimizing absolute value of Kendall's tau: -4e-04
Transformation parameter by minimizing absolute value of Kendall's tau: 0.0353
Transformation parameter by minimizing absolute value of Kendall's tau: 0.071
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1067
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1424
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1781
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2138
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2495
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2852
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3209
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3566
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3923
Transformation parameter by minimizing absolute value of Kendall's tau: 0.428
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4637
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4994
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5351
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5708
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6065
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6422
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6779
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7136
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7493
Transformation parameter by minimizing absolute value of Kendall's tau: 0.785
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8207
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8564
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8921
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9278
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9635
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9992
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0349
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0706
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1063
Transformation parameter by minimizing absolute value of Kendall's tau: 1.142
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1777
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2134
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2491
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2848
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3205
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3562
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3919
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4276
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4633
Transformation parameter by minimizing absolute value of Kendall's tau: 1.499
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5347
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5704
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6061
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6418
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6775
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7132
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7489
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7846
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8203
Transformation parameter by minimizing absolute value of Kendall's tau: 1.856
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8917
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9274
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9631
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9988
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0345
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0702
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1059
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1416
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1773
Transformation parameter by minimizing absolute value of Kendall's tau: 2.213
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2487
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2844
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3201
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3558
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3915
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4272
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4629
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4986
Transformation parameter by minimizing absolute value of Kendall's tau: 2.5343
Transformation parameter by minimizing absolute value of Kendall's tau: 2.57
Transformation parameter by minimizing absolute value of Kendall's tau: 3.08
Transformation parameter by minimizing absolute value of Kendall's tau: 3.59
Transformation parameter by minimizing absolute value of Kendall's tau: 4.1
Transformation parameter by minimizing absolute value of Kendall's tau: 4.61
Transformation parameter by minimizing absolute value of Kendall's tau: 5.12
Transformation parameter by minimizing absolute value of Kendall's tau: 5.63
Transformation parameter by minimizing absolute value of Kendall's tau: 6.14
Transformation parameter by minimizing absolute value of Kendall's tau: 6.65
Transformation parameter by minimizing absolute value of Kendall's tau: 7.16
Transformation parameter by minimizing absolute value of Kendall's tau: 7.67
Transformation parameter by minimizing absolute value of Kendall's tau: 8.18
Transformation parameter by minimizing absolute value of Kendall's tau: 8.69
Transformation parameter by minimizing absolute value of Kendall's tau: 9.2
Transformation parameter by minimizing absolute value of Kendall's tau: 9.71
Transformation parameter by minimizing absolute value of Kendall's tau: 10.22
Transformation parameter by minimizing absolute value of Kendall's tau: 10.73
Transformation parameter by minimizing absolute value of Kendall's tau: 11.24
Transformation parameter by minimizing absolute value of Kendall's tau: 11.75
Transformation parameter by minimizing absolute value of Kendall's tau: 12.26
Transformation parameter by minimizing absolute value of Kendall's tau: 12.77
Transformation parameter by minimizing absolute value of Kendall's tau: 13.28
Transformation parameter by minimizing absolute value of Kendall's tau: 13.79
Transformation parameter by minimizing absolute value of Kendall's tau: 14.3
Transformation parameter by minimizing absolute value of Kendall's tau: 14.81
Transformation parameter by minimizing absolute value of Kendall's tau: 15.32
Transformation parameter by minimizing absolute value of Kendall's tau: 15.83
Transformation parameter by minimizing absolute value of Kendall's tau: 16.34
Transformation parameter by minimizing absolute value of Kendall's tau: 16.85
Transformation parameter by minimizing absolute value of Kendall's tau: 17.36
Transformation parameter by minimizing absolute value of Kendall's tau: 17.87
Transformation parameter by minimizing absolute value of Kendall's tau: 18.38
Transformation parameter by minimizing absolute value of Kendall's tau: 18.89
Transformation parameter by minimizing absolute value of Kendall's tau: 19.4
Transformation parameter by minimizing absolute value of Kendall's tau: 19.91
Transformation parameter by minimizing absolute value of Kendall's tau: 20.42
Transformation parameter by minimizing absolute value of Kendall's tau: 20.93
Transformation parameter by minimizing absolute value of Kendall's tau: 21.44
Transformation parameter by minimizing absolute value of Kendall's tau: 21.95
Transformation parameter by minimizing absolute value of Kendall's tau: 22.46
Transformation parameter by minimizing absolute value of Kendall's tau: 22.97
Transformation parameter by minimizing absolute value of Kendall's tau: 23.48
Transformation parameter by minimizing absolute value of Kendall's tau: 23.99
Transformation parameter by minimizing absolute value of Kendall's tau: 24.5
Transformation parameter by minimizing absolute value of Kendall's tau: 25.01
Transformation parameter by minimizing absolute value of Kendall's tau: 25.52
Transformation parameter by minimizing absolute value of Kendall's tau: 26.03
Transformation parameter by minimizing absolute value of Kendall's tau: 26.54
Transformation parameter by minimizing absolute value of Kendall's tau: 27.05
Transformation parameter by minimizing absolute value of Kendall's tau: 27.56
Transformation parameter by minimizing absolute value of Kendall's tau: 28.07
Transformation parameter by minimizing absolute value of Kendall's tau: 28.58
Transformation parameter by minimizing absolute value of Kendall's tau: 29.09
Transformation parameter by minimizing absolute value of Kendall's tau: 29.6
Transformation parameter by minimizing absolute value of Kendall's tau: 30.11
Transformation parameter by minimizing absolute value of Kendall's tau: 30.62
Transformation parameter by minimizing absolute value of Kendall's tau: 31.13
Transformation parameter by minimizing absolute value of Kendall's tau: 31.64
Transformation parameter by minimizing absolute value of Kendall's tau: 32.15
Transformation parameter by minimizing absolute value of Kendall's tau: 32.66
Transformation parameter by minimizing absolute value of Kendall's tau: 33.17
Transformation parameter by minimizing absolute value of Kendall's tau: 33.68
Transformation parameter by minimizing absolute value of Kendall's tau: 34.19
Transformation parameter by minimizing absolute value of Kendall's tau: 34.7
Transformation parameter by minimizing absolute value of Kendall's tau: 35.21
Transformation parameter by minimizing absolute value of Kendall's tau: 35.72
Transformation parameter by minimizing absolute value of Kendall's tau: 36.23
Transformation parameter by minimizing absolute value of Kendall's tau: 36.74
Transformation parameter by minimizing absolute value of Kendall's tau: 37.25
Transformation parameter by minimizing absolute value of Kendall's tau: 37.76
Transformation parameter by minimizing absolute value of Kendall's tau: 38.27
Transformation parameter by minimizing absolute value of Kendall's tau: 38.78
Transformation parameter by minimizing absolute value of Kendall's tau: 39.29
Transformation parameter by minimizing absolute value of Kendall's tau: 39.8
Transformation parameter by minimizing absolute value of Kendall's tau: 40.31
Transformation parameter by minimizing absolute value of Kendall's tau: 40.82
Transformation parameter by minimizing absolute value of Kendall's tau: 41.33
Transformation parameter by minimizing absolute value of Kendall's tau: 41.84
Transformation parameter by minimizing absolute value of Kendall's tau: 42.35
Transformation parameter by minimizing absolute value of Kendall's tau: 42.86
Transformation parameter by minimizing absolute value of Kendall's tau: 43.37
Transformation parameter by minimizing absolute value of Kendall's tau: 43.88
Transformation parameter by minimizing absolute value of Kendall's tau: 44.39
Transformation parameter by minimizing absolute value of Kendall's tau: 44.9
Transformation parameter by minimizing absolute value of Kendall's tau: 45.41
Transformation parameter by minimizing absolute value of Kendall's tau: 45.92
Transformation parameter by minimizing absolute value of Kendall's tau: 46.43
Transformation parameter by minimizing absolute value of Kendall's tau: 46.94
Transformation parameter by minimizing absolute value of Kendall's tau: 47.45
Transformation parameter by minimizing absolute value of Kendall's tau: 47.96
Transformation parameter by minimizing absolute value of Kendall's tau: 48.47
Transformation parameter by minimizing absolute value of Kendall's tau: 48.98
Transformation parameter by minimizing absolute value of Kendall's tau: 49.49
Transformation parameter by minimizing absolute value of Kendall's tau: 50
Transformation parameter by maximizing p-value of the test: -1
>
> ## Checking the transformation parameter
> fit$byTau$par
[1] -0.999990000 -0.964290007 -0.928590014 -0.892890021 -0.857190028
[6] -0.821490035 -0.785790042 -0.750090049 -0.714390056 -0.678690063
[11] -0.642990070 -0.607290077 -0.571590084 -0.535890091 -0.500190098
[16] -0.464490105 -0.428790112 -0.393090119 -0.357390126 -0.321690133
[21] -0.285990140 -0.250290147 -0.214590154 -0.178890161 -0.143190168
[26] -0.107490175 -0.071790182 -0.036090189 -0.000390196 0.035309797
[31] 0.071009790 0.106709783 0.142409776 0.178109769 0.213809762
[36] 0.249509755 0.285209748 0.320909741 0.356609734 0.392309727
[41] 0.428009720 0.463709713 0.499409706 0.535109699 0.570809692
[46] 0.606509685 0.642209678 0.677909671 0.713609664 0.749309657
[51] 0.785009650 0.820709643 0.856409636 0.892109629 0.927809622
[56] 0.963509615 0.999209608 1.034909601 1.070609594 1.106309587
[61] 1.142009580 1.177709573 1.213409566 1.249109559 1.284809552
[66] 1.320509545 1.356209538 1.391909531 1.427609524 1.463309517
[71] 1.499009510 1.534709503 1.570409496 1.606109489 1.641809482
[76] 1.677509475 1.713209468 1.748909461 1.784609454 1.820309447
[81] 1.856009440 1.891709433 1.927409426 1.963109419 1.998809412
[86] 2.034509405 2.070209398 2.105909391 2.141609384 2.177309377
[91] 2.213009370 2.248709363 2.284409356 2.320109349 2.355809342
[96] 2.391509335 2.427209328 2.462909321 2.498609314 2.534309307
[101] 2.570009300 3.080009200 3.590009100 4.100009000 4.610008900
[106] 5.120008800 5.630008700 6.140008600 6.650008500 7.160008400
[111] 7.670008300 8.180008200 8.690008100 9.200008000 9.710007900
[116] 10.220007800 10.730007700 11.240007600 11.750007500 12.260007400
[121] 12.770007300 13.280007200 13.790007100 14.300007000 14.810006900
[126] 15.320006800 15.830006700 16.340006600 16.850006500 17.360006400
[131] 17.870006300 18.380006200 18.890006100 19.400006000 19.910005900
[136] 20.420005800 20.930005700 21.440005600 21.950005500 22.460005400
[141] 22.970005300 23.480005200 23.990005100 24.500005000 25.010004900
[146] 25.520004800 26.030004700 26.540004600 27.050004500 27.560004400
[151] 28.070004300 28.580004200 29.090004100 29.600004000 30.110003900
[156] 30.620003800 31.130003700 31.640003600 32.150003500 32.660003400
[161] 33.170003300 33.680003200 34.190003100 34.700003000 35.210002900
[166] 35.720002800 36.230002700 36.740002600 37.250002500 37.760002400
[171] 38.270002300 38.780002200 39.290002100 39.800002000 40.310001900
[176] 40.820001800 41.330001700 41.840001600 42.350001500 42.860001400
[181] 43.370001300 43.880001200 44.390001100 44.900001000 45.410000900
[186] 45.920000800 46.430000700 46.940000600 47.450000500 47.960000400
[191] 48.470000300 48.980000200 49.490000100 50.000000000
> fit$byTau$obj
[1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[38] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[75] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[112] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[149] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[186] 0 0 0 0 0 0 0 0 0
> with(dat, condKendall(trun, obs, delta, method = "IPW2", a = fit$byTau$par))$PE
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Error in Surv(trun, obs, 1 - delta) :
Start and stop are different lengths
Calls: with ... <Anonymous> -> model.frame.default -> eval -> eval -> Surv
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1-5
Check: examples
Result: ERROR
Running examples in ‘tranSurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: tranSurvfit
> ### Title: This function creates survival curves under dependent truncation
> ### and independent censoring via a structural transformation model.
> ### Aliases: tranSurvfit
>
> ### ** Examples
>
> ## Generate simulated data from a transformation model
> datgen <- function(n) {
+ a <- -0.3
+ X <- rweibull(n, 2, 4) ## failure times
+ U <- rweibull(n, 2, 1) ## latent truncation time
+ T <- (1 + a) * U - a * X ## apply transformation
+ C <- rlnorm(n, .8, 1) ## censoring
+ dat <- data.frame(trun = T, obs = pmin(X, C), delta = 1 * (X <= C))
+ return(subset(dat, trun <= obs))
+ }
>
> set.seed(123)
> dat <- datgen(300)
> fit <- with(dat, tranSurvfit(trun, obs, delta))
> fit
Fitting structural transformation model
Call: tranSurvfit(trun = trun, obs = obs, delta = delta)
Conditional Kendall's tau = 0.5212 , p-value = 0
Restricted inverse probability weighted Kendall's tau = 0.5057 , p-value = 2e-04
Transformation parameter by minimizing absolute value of Kendall's tau: -1
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8929
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8572
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8215
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7858
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7501
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7144
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6787
Transformation parameter by minimizing absolute value of Kendall's tau: -0.643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6073
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5716
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5359
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5002
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4645
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4288
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3931
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3574
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3217
Transformation parameter by minimizing absolute value of Kendall's tau: -0.286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2503
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2146
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1789
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1432
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1075
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0718
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0361
Transformation parameter by minimizing absolute value of Kendall's tau: -4e-04
Transformation parameter by minimizing absolute value of Kendall's tau: 0.0353
Transformation parameter by minimizing absolute value of Kendall's tau: 0.071
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1067
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1424
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1781
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2138
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2495
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2852
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3209
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3566
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3923
Transformation parameter by minimizing absolute value of Kendall's tau: 0.428
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4637
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4994
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5351
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5708
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6065
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6422
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6779
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7136
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7493
Transformation parameter by minimizing absolute value of Kendall's tau: 0.785
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8207
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8564
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8921
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9278
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9635
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9992
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0349
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0706
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1063
Transformation parameter by minimizing absolute value of Kendall's tau: 1.142
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1777
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2134
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2491
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2848
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3205
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3562
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3919
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4276
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4633
Transformation parameter by minimizing absolute value of Kendall's tau: 1.499
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5347
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5704
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6061
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6418
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6775
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7132
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7489
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7846
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8203
Transformation parameter by minimizing absolute value of Kendall's tau: 1.856
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8917
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9274
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9631
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9988
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0345
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0702
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1059
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1416
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1773
Transformation parameter by minimizing absolute value of Kendall's tau: 2.213
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2487
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2844
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3201
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3558
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3915
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4272
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4629
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4986
Transformation parameter by minimizing absolute value of Kendall's tau: 2.5343
Transformation parameter by minimizing absolute value of Kendall's tau: 2.57
Transformation parameter by minimizing absolute value of Kendall's tau: 3.08
Transformation parameter by minimizing absolute value of Kendall's tau: 3.59
Transformation parameter by minimizing absolute value of Kendall's tau: 4.1
Transformation parameter by minimizing absolute value of Kendall's tau: 4.61
Transformation parameter by minimizing absolute value of Kendall's tau: 5.12
Transformation parameter by minimizing absolute value of Kendall's tau: 5.63
Transformation parameter by minimizing absolute value of Kendall's tau: 6.14
Transformation parameter by minimizing absolute value of Kendall's tau: 6.65
Transformation parameter by minimizing absolute value of Kendall's tau: 7.16
Transformation parameter by minimizing absolute value of Kendall's tau: 7.67
Transformation parameter by minimizing absolute value of Kendall's tau: 8.18
Transformation parameter by minimizing absolute value of Kendall's tau: 8.69
Transformation parameter by minimizing absolute value of Kendall's tau: 9.2
Transformation parameter by minimizing absolute value of Kendall's tau: 9.71
Transformation parameter by minimizing absolute value of Kendall's tau: 10.22
Transformation parameter by minimizing absolute value of Kendall's tau: 10.73
Transformation parameter by minimizing absolute value of Kendall's tau: 11.24
Transformation parameter by minimizing absolute value of Kendall's tau: 11.75
Transformation parameter by minimizing absolute value of Kendall's tau: 12.26
Transformation parameter by minimizing absolute value of Kendall's tau: 12.77
Transformation parameter by minimizing absolute value of Kendall's tau: 13.28
Transformation parameter by minimizing absolute value of Kendall's tau: 13.79
Transformation parameter by minimizing absolute value of Kendall's tau: 14.3
Transformation parameter by minimizing absolute value of Kendall's tau: 14.81
Transformation parameter by minimizing absolute value of Kendall's tau: 15.32
Transformation parameter by minimizing absolute value of Kendall's tau: 15.83
Transformation parameter by minimizing absolute value of Kendall's tau: 16.34
Transformation parameter by minimizing absolute value of Kendall's tau: 16.85
Transformation parameter by minimizing absolute value of Kendall's tau: 17.36
Transformation parameter by minimizing absolute value of Kendall's tau: 17.87
Transformation parameter by minimizing absolute value of Kendall's tau: 18.38
Transformation parameter by minimizing absolute value of Kendall's tau: 18.89
Transformation parameter by minimizing absolute value of Kendall's tau: 19.4
Transformation parameter by minimizing absolute value of Kendall's tau: 19.91
Transformation parameter by minimizing absolute value of Kendall's tau: 20.42
Transformation parameter by minimizing absolute value of Kendall's tau: 20.93
Transformation parameter by minimizing absolute value of Kendall's tau: 21.44
Transformation parameter by minimizing absolute value of Kendall's tau: 21.95
Transformation parameter by minimizing absolute value of Kendall's tau: 22.46
Transformation parameter by minimizing absolute value of Kendall's tau: 22.97
Transformation parameter by minimizing absolute value of Kendall's tau: 23.48
Transformation parameter by minimizing absolute value of Kendall's tau: 23.99
Transformation parameter by minimizing absolute value of Kendall's tau: 24.5
Transformation parameter by minimizing absolute value of Kendall's tau: 25.01
Transformation parameter by minimizing absolute value of Kendall's tau: 25.52
Transformation parameter by minimizing absolute value of Kendall's tau: 26.03
Transformation parameter by minimizing absolute value of Kendall's tau: 26.54
Transformation parameter by minimizing absolute value of Kendall's tau: 27.05
Transformation parameter by minimizing absolute value of Kendall's tau: 27.56
Transformation parameter by minimizing absolute value of Kendall's tau: 28.07
Transformation parameter by minimizing absolute value of Kendall's tau: 28.58
Transformation parameter by minimizing absolute value of Kendall's tau: 29.09
Transformation parameter by minimizing absolute value of Kendall's tau: 29.6
Transformation parameter by minimizing absolute value of Kendall's tau: 30.11
Transformation parameter by minimizing absolute value of Kendall's tau: 30.62
Transformation parameter by minimizing absolute value of Kendall's tau: 31.13
Transformation parameter by minimizing absolute value of Kendall's tau: 31.64
Transformation parameter by minimizing absolute value of Kendall's tau: 32.15
Transformation parameter by minimizing absolute value of Kendall's tau: 32.66
Transformation parameter by minimizing absolute value of Kendall's tau: 33.17
Transformation parameter by minimizing absolute value of Kendall's tau: 33.68
Transformation parameter by minimizing absolute value of Kendall's tau: 34.19
Transformation parameter by minimizing absolute value of Kendall's tau: 34.7
Transformation parameter by minimizing absolute value of Kendall's tau: 35.21
Transformation parameter by minimizing absolute value of Kendall's tau: 35.72
Transformation parameter by minimizing absolute value of Kendall's tau: 36.23
Transformation parameter by minimizing absolute value of Kendall's tau: 36.74
Transformation parameter by minimizing absolute value of Kendall's tau: 37.25
Transformation parameter by minimizing absolute value of Kendall's tau: 37.76
Transformation parameter by minimizing absolute value of Kendall's tau: 38.27
Transformation parameter by minimizing absolute value of Kendall's tau: 38.78
Transformation parameter by minimizing absolute value of Kendall's tau: 39.29
Transformation parameter by minimizing absolute value of Kendall's tau: 39.8
Transformation parameter by minimizing absolute value of Kendall's tau: 40.31
Transformation parameter by minimizing absolute value of Kendall's tau: 40.82
Transformation parameter by minimizing absolute value of Kendall's tau: 41.33
Transformation parameter by minimizing absolute value of Kendall's tau: 41.84
Transformation parameter by minimizing absolute value of Kendall's tau: 42.35
Transformation parameter by minimizing absolute value of Kendall's tau: 42.86
Transformation parameter by minimizing absolute value of Kendall's tau: 43.37
Transformation parameter by minimizing absolute value of Kendall's tau: 43.88
Transformation parameter by minimizing absolute value of Kendall's tau: 44.39
Transformation parameter by minimizing absolute value of Kendall's tau: 44.9
Transformation parameter by minimizing absolute value of Kendall's tau: 45.41
Transformation parameter by minimizing absolute value of Kendall's tau: 45.92
Transformation parameter by minimizing absolute value of Kendall's tau: 46.43
Transformation parameter by minimizing absolute value of Kendall's tau: 46.94
Transformation parameter by minimizing absolute value of Kendall's tau: 47.45
Transformation parameter by minimizing absolute value of Kendall's tau: 47.96
Transformation parameter by minimizing absolute value of Kendall's tau: 48.47
Transformation parameter by minimizing absolute value of Kendall's tau: 48.98
Transformation parameter by minimizing absolute value of Kendall's tau: 49.49
Transformation parameter by minimizing absolute value of Kendall's tau: 50
Transformation parameter by maximizing p-value of the test: -1
>
> ## Checking the transformation parameter
> fit$byTau$par
[1] -0.999990000 -0.964290007 -0.928590014 -0.892890021 -0.857190028
[6] -0.821490035 -0.785790042 -0.750090049 -0.714390056 -0.678690063
[11] -0.642990070 -0.607290077 -0.571590084 -0.535890091 -0.500190098
[16] -0.464490105 -0.428790112 -0.393090119 -0.357390126 -0.321690133
[21] -0.285990140 -0.250290147 -0.214590154 -0.178890161 -0.143190168
[26] -0.107490175 -0.071790182 -0.036090189 -0.000390196 0.035309797
[31] 0.071009790 0.106709783 0.142409776 0.178109769 0.213809762
[36] 0.249509755 0.285209748 0.320909741 0.356609734 0.392309727
[41] 0.428009720 0.463709713 0.499409706 0.535109699 0.570809692
[46] 0.606509685 0.642209678 0.677909671 0.713609664 0.749309657
[51] 0.785009650 0.820709643 0.856409636 0.892109629 0.927809622
[56] 0.963509615 0.999209608 1.034909601 1.070609594 1.106309587
[61] 1.142009580 1.177709573 1.213409566 1.249109559 1.284809552
[66] 1.320509545 1.356209538 1.391909531 1.427609524 1.463309517
[71] 1.499009510 1.534709503 1.570409496 1.606109489 1.641809482
[76] 1.677509475 1.713209468 1.748909461 1.784609454 1.820309447
[81] 1.856009440 1.891709433 1.927409426 1.963109419 1.998809412
[86] 2.034509405 2.070209398 2.105909391 2.141609384 2.177309377
[91] 2.213009370 2.248709363 2.284409356 2.320109349 2.355809342
[96] 2.391509335 2.427209328 2.462909321 2.498609314 2.534309307
[101] 2.570009300 3.080009200 3.590009100 4.100009000 4.610008900
[106] 5.120008800 5.630008700 6.140008600 6.650008500 7.160008400
[111] 7.670008300 8.180008200 8.690008100 9.200008000 9.710007900
[116] 10.220007800 10.730007700 11.240007600 11.750007500 12.260007400
[121] 12.770007300 13.280007200 13.790007100 14.300007000 14.810006900
[126] 15.320006800 15.830006700 16.340006600 16.850006500 17.360006400
[131] 17.870006300 18.380006200 18.890006100 19.400006000 19.910005900
[136] 20.420005800 20.930005700 21.440005600 21.950005500 22.460005400
[141] 22.970005300 23.480005200 23.990005100 24.500005000 25.010004900
[146] 25.520004800 26.030004700 26.540004600 27.050004500 27.560004400
[151] 28.070004300 28.580004200 29.090004100 29.600004000 30.110003900
[156] 30.620003800 31.130003700 31.640003600 32.150003500 32.660003400
[161] 33.170003300 33.680003200 34.190003100 34.700003000 35.210002900
[166] 35.720002800 36.230002700 36.740002600 37.250002500 37.760002400
[171] 38.270002300 38.780002200 39.290002100 39.800002000 40.310001900
[176] 40.820001800 41.330001700 41.840001600 42.350001500 42.860001400
[181] 43.370001300 43.880001200 44.390001100 44.900001000 45.410000900
[186] 45.920000800 46.430000700 46.940000600 47.450000500 47.960000400
[191] 48.470000300 48.980000200 49.490000100 50.000000000
> fit$byTau$obj
[1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[38] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[75] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[112] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[149] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[186] 0 0 0 0 0 0 0 0 0
> with(dat, condKendall(trun, obs, delta, method = "IPW2", a = fit$byTau$par))$PE
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Error in Surv(trun, obs, 1 - delta) :
Start and stop are different lengths
Calls: with ... <Anonymous> -> model.frame.default -> eval -> eval -> Surv
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1-5
Check: examples
Result: ERROR
Running examples in ‘tranSurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: tranSurvfit
> ### Title: This function creates survival curves under dependent truncation
> ### and independent censoring via a structural transformation model.
> ### Aliases: tranSurvfit
>
> ### ** Examples
>
> ## Generate simulated data from a transformation model
> datgen <- function(n) {
+ a <- -0.3
+ X <- rweibull(n, 2, 4) ## failure times
+ U <- rweibull(n, 2, 1) ## latent truncation time
+ T <- (1 + a) * U - a * X ## apply transformation
+ C <- rlnorm(n, .8, 1) ## censoring
+ dat <- data.frame(trun = T, obs = pmin(X, C), delta = 1 * (X <= C))
+ return(subset(dat, trun <= obs))
+ }
>
> set.seed(123)
> dat <- datgen(300)
> fit <- with(dat, tranSurvfit(trun, obs, delta))
> fit
Fitting structural transformation model
Call: tranSurvfit(trun = trun, obs = obs, delta = delta)
Conditional Kendall's tau = 0.5213 , p-value = 0
Restricted inverse probability weighted Kendall's tau = 0.5055 , p-value = 2e-04
Transformation parameter by minimizing absolute value of Kendall's tau: -1
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.9286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8929
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8572
Transformation parameter by minimizing absolute value of Kendall's tau: -0.8215
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7858
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7501
Transformation parameter by minimizing absolute value of Kendall's tau: -0.7144
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6787
Transformation parameter by minimizing absolute value of Kendall's tau: -0.643
Transformation parameter by minimizing absolute value of Kendall's tau: -0.6073
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5716
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5359
Transformation parameter by minimizing absolute value of Kendall's tau: -0.5002
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4645
Transformation parameter by minimizing absolute value of Kendall's tau: -0.4288
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3931
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3574
Transformation parameter by minimizing absolute value of Kendall's tau: -0.3217
Transformation parameter by minimizing absolute value of Kendall's tau: -0.286
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2503
Transformation parameter by minimizing absolute value of Kendall's tau: -0.2146
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1789
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1432
Transformation parameter by minimizing absolute value of Kendall's tau: -0.1075
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0718
Transformation parameter by minimizing absolute value of Kendall's tau: -0.0361
Transformation parameter by minimizing absolute value of Kendall's tau: -4e-04
Transformation parameter by minimizing absolute value of Kendall's tau: 0.0353
Transformation parameter by minimizing absolute value of Kendall's tau: 0.071
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1067
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1424
Transformation parameter by minimizing absolute value of Kendall's tau: 0.1781
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2138
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2495
Transformation parameter by minimizing absolute value of Kendall's tau: 0.2852
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3209
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3566
Transformation parameter by minimizing absolute value of Kendall's tau: 0.3923
Transformation parameter by minimizing absolute value of Kendall's tau: 0.428
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4637
Transformation parameter by minimizing absolute value of Kendall's tau: 0.4994
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5351
Transformation parameter by minimizing absolute value of Kendall's tau: 0.5708
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6065
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6422
Transformation parameter by minimizing absolute value of Kendall's tau: 0.6779
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7136
Transformation parameter by minimizing absolute value of Kendall's tau: 0.7493
Transformation parameter by minimizing absolute value of Kendall's tau: 0.785
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8207
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8564
Transformation parameter by minimizing absolute value of Kendall's tau: 0.8921
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9278
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9635
Transformation parameter by minimizing absolute value of Kendall's tau: 0.9992
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0349
Transformation parameter by minimizing absolute value of Kendall's tau: 1.0706
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1063
Transformation parameter by minimizing absolute value of Kendall's tau: 1.142
Transformation parameter by minimizing absolute value of Kendall's tau: 1.1777
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2134
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2491
Transformation parameter by minimizing absolute value of Kendall's tau: 1.2848
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3205
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3562
Transformation parameter by minimizing absolute value of Kendall's tau: 1.3919
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4276
Transformation parameter by minimizing absolute value of Kendall's tau: 1.4633
Transformation parameter by minimizing absolute value of Kendall's tau: 1.499
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5347
Transformation parameter by minimizing absolute value of Kendall's tau: 1.5704
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6061
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6418
Transformation parameter by minimizing absolute value of Kendall's tau: 1.6775
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7132
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7489
Transformation parameter by minimizing absolute value of Kendall's tau: 1.7846
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8203
Transformation parameter by minimizing absolute value of Kendall's tau: 1.856
Transformation parameter by minimizing absolute value of Kendall's tau: 1.8917
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9274
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9631
Transformation parameter by minimizing absolute value of Kendall's tau: 1.9988
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0345
Transformation parameter by minimizing absolute value of Kendall's tau: 2.0702
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1059
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1416
Transformation parameter by minimizing absolute value of Kendall's tau: 2.1773
Transformation parameter by minimizing absolute value of Kendall's tau: 2.213
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2487
Transformation parameter by minimizing absolute value of Kendall's tau: 2.2844
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3201
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3558
Transformation parameter by minimizing absolute value of Kendall's tau: 2.3915
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4272
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4629
Transformation parameter by minimizing absolute value of Kendall's tau: 2.4986
Transformation parameter by minimizing absolute value of Kendall's tau: 2.5343
Transformation parameter by minimizing absolute value of Kendall's tau: 2.57
Transformation parameter by minimizing absolute value of Kendall's tau: 3.08
Transformation parameter by minimizing absolute value of Kendall's tau: 3.59
Transformation parameter by minimizing absolute value of Kendall's tau: 4.1
Transformation parameter by minimizing absolute value of Kendall's tau: 4.61
Transformation parameter by minimizing absolute value of Kendall's tau: 5.12
Transformation parameter by minimizing absolute value of Kendall's tau: 5.63
Transformation parameter by minimizing absolute value of Kendall's tau: 6.14
Transformation parameter by minimizing absolute value of Kendall's tau: 6.65
Transformation parameter by minimizing absolute value of Kendall's tau: 7.16
Transformation parameter by minimizing absolute value of Kendall's tau: 7.67
Transformation parameter by minimizing absolute value of Kendall's tau: 8.18
Transformation parameter by minimizing absolute value of Kendall's tau: 8.69
Transformation parameter by minimizing absolute value of Kendall's tau: 9.2
Transformation parameter by minimizing absolute value of Kendall's tau: 9.71
Transformation parameter by minimizing absolute value of Kendall's tau: 10.22
Transformation parameter by minimizing absolute value of Kendall's tau: 10.73
Transformation parameter by minimizing absolute value of Kendall's tau: 11.24
Transformation parameter by minimizing absolute value of Kendall's tau: 11.75
Transformation parameter by minimizing absolute value of Kendall's tau: 12.26
Transformation parameter by minimizing absolute value of Kendall's tau: 12.77
Transformation parameter by minimizing absolute value of Kendall's tau: 13.28
Transformation parameter by minimizing absolute value of Kendall's tau: 13.79
Transformation parameter by minimizing absolute value of Kendall's tau: 14.3
Transformation parameter by minimizing absolute value of Kendall's tau: 14.81
Transformation parameter by minimizing absolute value of Kendall's tau: 15.32
Transformation parameter by minimizing absolute value of Kendall's tau: 15.83
Transformation parameter by minimizing absolute value of Kendall's tau: 16.34
Transformation parameter by minimizing absolute value of Kendall's tau: 16.85
Transformation parameter by minimizing absolute value of Kendall's tau: 17.36
Transformation parameter by minimizing absolute value of Kendall's tau: 17.87
Transformation parameter by minimizing absolute value of Kendall's tau: 18.38
Transformation parameter by minimizing absolute value of Kendall's tau: 18.89
Transformation parameter by minimizing absolute value of Kendall's tau: 19.4
Transformation parameter by minimizing absolute value of Kendall's tau: 19.91
Transformation parameter by minimizing absolute value of Kendall's tau: 20.42
Transformation parameter by minimizing absolute value of Kendall's tau: 20.93
Transformation parameter by minimizing absolute value of Kendall's tau: 21.44
Transformation parameter by minimizing absolute value of Kendall's tau: 21.95
Transformation parameter by minimizing absolute value of Kendall's tau: 22.46
Transformation parameter by minimizing absolute value of Kendall's tau: 22.97
Transformation parameter by minimizing absolute value of Kendall's tau: 23.48
Transformation parameter by minimizing absolute value of Kendall's tau: 23.99
Transformation parameter by minimizing absolute value of Kendall's tau: 24.5
Transformation parameter by minimizing absolute value of Kendall's tau: 25.01
Transformation parameter by minimizing absolute value of Kendall's tau: 25.52
Transformation parameter by minimizing absolute value of Kendall's tau: 26.03
Transformation parameter by minimizing absolute value of Kendall's tau: 26.54
Transformation parameter by minimizing absolute value of Kendall's tau: 27.05
Transformation parameter by minimizing absolute value of Kendall's tau: 27.56
Transformation parameter by minimizing absolute value of Kendall's tau: 28.07
Transformation parameter by minimizing absolute value of Kendall's tau: 28.58
Transformation parameter by minimizing absolute value of Kendall's tau: 29.09
Transformation parameter by minimizing absolute value of Kendall's tau: 29.6
Transformation parameter by minimizing absolute value of Kendall's tau: 30.11
Transformation parameter by minimizing absolute value of Kendall's tau: 30.62
Transformation parameter by minimizing absolute value of Kendall's tau: 31.13
Transformation parameter by minimizing absolute value of Kendall's tau: 31.64
Transformation parameter by minimizing absolute value of Kendall's tau: 32.15
Transformation parameter by minimizing absolute value of Kendall's tau: 32.66
Transformation parameter by minimizing absolute value of Kendall's tau: 33.17
Transformation parameter by minimizing absolute value of Kendall's tau: 33.68
Transformation parameter by minimizing absolute value of Kendall's tau: 34.19
Transformation parameter by minimizing absolute value of Kendall's tau: 34.7
Transformation parameter by minimizing absolute value of Kendall's tau: 35.21
Transformation parameter by minimizing absolute value of Kendall's tau: 35.72
Transformation parameter by minimizing absolute value of Kendall's tau: 36.23
Transformation parameter by minimizing absolute value of Kendall's tau: 36.74
Transformation parameter by minimizing absolute value of Kendall's tau: 37.25
Transformation parameter by minimizing absolute value of Kendall's tau: 37.76
Transformation parameter by minimizing absolute value of Kendall's tau: 38.27
Transformation parameter by minimizing absolute value of Kendall's tau: 38.78
Transformation parameter by minimizing absolute value of Kendall's tau: 39.29
Transformation parameter by minimizing absolute value of Kendall's tau: 39.8
Transformation parameter by minimizing absolute value of Kendall's tau: 40.31
Transformation parameter by minimizing absolute value of Kendall's tau: 40.82
Transformation parameter by minimizing absolute value of Kendall's tau: 41.33
Transformation parameter by minimizing absolute value of Kendall's tau: 41.84
Transformation parameter by minimizing absolute value of Kendall's tau: 42.35
Transformation parameter by minimizing absolute value of Kendall's tau: 42.86
Transformation parameter by minimizing absolute value of Kendall's tau: 43.37
Transformation parameter by minimizing absolute value of Kendall's tau: 43.88
Transformation parameter by minimizing absolute value of Kendall's tau: 44.39
Transformation parameter by minimizing absolute value of Kendall's tau: 44.9
Transformation parameter by minimizing absolute value of Kendall's tau: 45.41
Transformation parameter by minimizing absolute value of Kendall's tau: 45.92
Transformation parameter by minimizing absolute value of Kendall's tau: 46.43
Transformation parameter by minimizing absolute value of Kendall's tau: 46.94
Transformation parameter by minimizing absolute value of Kendall's tau: 47.45
Transformation parameter by minimizing absolute value of Kendall's tau: 47.96
Transformation parameter by minimizing absolute value of Kendall's tau: 48.47
Transformation parameter by minimizing absolute value of Kendall's tau: 48.98
Transformation parameter by minimizing absolute value of Kendall's tau: 49.49
Transformation parameter by minimizing absolute value of Kendall's tau: 50
Transformation parameter by maximizing p-value of the test: -1
>
> ## Checking the transformation parameter
> fit$byTau$par
[1] -0.999990000 -0.964290007 -0.928590014 -0.892890021 -0.857190028
[6] -0.821490035 -0.785790042 -0.750090049 -0.714390056 -0.678690063
[11] -0.642990070 -0.607290077 -0.571590084 -0.535890091 -0.500190098
[16] -0.464490105 -0.428790112 -0.393090119 -0.357390126 -0.321690133
[21] -0.285990140 -0.250290147 -0.214590154 -0.178890161 -0.143190168
[26] -0.107490175 -0.071790182 -0.036090189 -0.000390196 0.035309797
[31] 0.071009790 0.106709783 0.142409776 0.178109769 0.213809762
[36] 0.249509755 0.285209748 0.320909741 0.356609734 0.392309727
[41] 0.428009720 0.463709713 0.499409706 0.535109699 0.570809692
[46] 0.606509685 0.642209678 0.677909671 0.713609664 0.749309657
[51] 0.785009650 0.820709643 0.856409636 0.892109629 0.927809622
[56] 0.963509615 0.999209608 1.034909601 1.070609594 1.106309587
[61] 1.142009580 1.177709573 1.213409566 1.249109559 1.284809552
[66] 1.320509545 1.356209538 1.391909531 1.427609524 1.463309517
[71] 1.499009510 1.534709503 1.570409496 1.606109489 1.641809482
[76] 1.677509475 1.713209468 1.748909461 1.784609454 1.820309447
[81] 1.856009440 1.891709433 1.927409426 1.963109419 1.998809412
[86] 2.034509405 2.070209398 2.105909391 2.141609384 2.177309377
[91] 2.213009370 2.248709363 2.284409356 2.320109349 2.355809342
[96] 2.391509335 2.427209328 2.462909321 2.498609314 2.534309307
[101] 2.570009300 3.080009200 3.590009100 4.100009000 4.610008900
[106] 5.120008800 5.630008700 6.140008600 6.650008500 7.160008400
[111] 7.670008300 8.180008200 8.690008100 9.200008000 9.710007900
[116] 10.220007800 10.730007700 11.240007600 11.750007500 12.260007400
[121] 12.770007300 13.280007200 13.790007100 14.300007000 14.810006900
[126] 15.320006800 15.830006700 16.340006600 16.850006500 17.360006400
[131] 17.870006300 18.380006200 18.890006100 19.400006000 19.910005900
[136] 20.420005800 20.930005700 21.440005600 21.950005500 22.460005400
[141] 22.970005300 23.480005200 23.990005100 24.500005000 25.010004900
[146] 25.520004800 26.030004700 26.540004600 27.050004500 27.560004400
[151] 28.070004300 28.580004200 29.090004100 29.600004000 30.110003900
[156] 30.620003800 31.130003700 31.640003600 32.150003500 32.660003400
[161] 33.170003300 33.680003200 34.190003100 34.700003000 35.210002900
[166] 35.720002800 36.230002700 36.740002600 37.250002500 37.760002400
[171] 38.270002300 38.780002200 39.290002100 39.800002000 40.310001900
[176] 40.820001800 41.330001700 41.840001600 42.350001500 42.860001400
[181] 43.370001300 43.880001200 44.390001100 44.900001000 45.410000900
[186] 45.920000800 46.430000700 46.940000600 47.450000500 47.960000400
[191] 48.470000300 48.980000200 49.490000100 50.000000000
> fit$byTau$obj
[1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[38] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[75] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[112] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[149] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[186] 0 0 0 0 0 0 0 0 0
> with(dat, condKendall(trun, obs, delta, method = "IPW2", a = fit$byTau$par))$PE
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Warning in mapply(FUN, X = obs, T = trun, a = a) :
longer argument not a multiple of length of shorter
Error in Surv(trun, obs, 1 - delta) :
Start and stop are different lengths
Calls: with ... <Anonymous> -> model.frame.default -> eval -> eval -> Surv
Execution halted
Flavor: r-release-osx-x86_64