Last updated on 2019-01-26 15:47:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-5 | 5.03 | 55.22 | 60.25 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0-5 | 4.10 | 42.78 | 46.88 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0-5 | 70.60 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-5 | 67.69 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.0-5 | 9.00 | 91.00 | 100.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0-5 | 5.31 | 52.30 | 57.61 | NOTE | |
| r-patched-solaris-x86 | 1.0-5 | 103.40 | NOTE | |||
| r-release-linux-x86_64 | 1.0-5 | 5.18 | 52.35 | 57.53 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.0-5 | 12.00 | 65.00 | 77.00 | NOTE | |
| r-release-osx-x86_64 | 1.0-5 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0-5 | 12.00 | 65.00 | 77.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.0-5 | NOTE |
Version: 1.0-5
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.0-5
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
‘genetics’ ‘survival’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘genetics’ ‘survival’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.0-5
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
summary.luca
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.0-5
Check: R code for possible problems
Result: NOTE
get.Z.HWP: no visible global function definition for ‘is.genotype’
get.Z.HWP: no visible global function definition for ‘allele.count’
get.Z.dep: no visible global function definition for ‘model.matrix’
get.Z.dep: no visible global function definition for ‘formula’
get.Z.saturated: no visible global function definition for ‘formula’
get.Z.saturated: no visible global function definition for
‘model.matrix’
get.lambda: no visible global function definition for ‘is.genotype’
get.lambda: no visible global function definition for ‘model.matrix’
get.lambda: no visible global function definition for ‘heterozygote’
luca: no visible global function definition for ‘is.genotype’
luca: no visible global function definition for ‘genotype’
luca: no visible global function definition for ‘Surv’
luca: no visible global function definition for ‘coxph.fit’
luca: no visible global function definition for ‘coxph.control’
summary.luca: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
Surv allele.count coxph.control coxph.fit formula genotype
heterozygote is.genotype model.matrix pchisq
Consider adding
importFrom("stats", "formula", "model.matrix", "pchisq")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64