Last updated on 2019-10-26 08:49:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-1 | 200.94 | 105.47 | 306.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-1 | 143.04 | 81.81 | 224.85 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-1 | 430.70 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-1 | 372.10 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.0-1 | 405.00 | 241.00 | 646.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0-1 | 143.83 | 102.64 | 246.47 | OK | |
| r-patched-solaris-x86 | 1.0-1 | 155.40 | ERROR | |||
| r-release-linux-x86_64 | 1.0-0 | 142.95 | 113.68 | 256.63 | OK | |
| r-release-windows-ix86+x86_64 | 1.0-1 | 416.00 | 212.00 | 628.00 | NOTE | |
| r-release-osx-x86_64 | 1.0-0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0-1 | 301.00 | 168.00 | 469.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.0-0 | NOTE |
Version: 1.0-1
Check: installed package size
Result: NOTE
installed size is 16.1Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 13.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0-1
Check: examples
Result: ERROR
Running examples in ‘BayesSUR-Ex.R’ failed
The error most likely occurred in:
> ### Name: plotEstimator
> ### Title: plot the posterior mean estimators
> ### Aliases: plotEstimator
>
> ### ** Examples
>
> data("example_eQTL", package = "BayesSUR")
> hyperpar <- list( a_w = 2 , b_w = 5 )
>
> fit <- BayesSUR(Y = example_eQTL[["blockList"]][[1]],
+ X = example_eQTL[["blockList"]][[2]],
+ data = example_eQTL[["data"]], outFilePath = tempdir(),
+ nIter = 100, burnin = 50, nChains = 2, gammaPrior = "hotspot",
+ hyperpar = hyperpar, tmpFolder = "tmp/" )
Warning in dir.create(outFilePath) :
'/tmp/Rtmp4Q77d6/working_dir/RtmpBYoJ64' already exists
BayesSUR -- Bayesian Seemingly Unrelated Regression Modelling
Using OpenMP
Reading input files ... ... successfull!
Clearing and initialising output files
Init RNG engine .. DONE !
Initialising the (SUR) MCMC Chain ... ... DONE!
Drafting the output files with the start of the chain ... DONE!
Starting 2 (parallel) chain(s) for 100 iterations:
MCMC ends. --- Saving results and exiting
Saved to : /tmp/Rtmp4Q77d6/working_dir/RtmpBYoJ64/data_SSUR_****_out.txt
Final w : 0.0412717
Final tau : 0.393376 w/ proposal variance: 0.02
Final eta : 3.67088e-06
-- Average Omega : 0.00812444
Final temperature ratio : 1.2
DONE, exiting!
>
> ## check output
> # Plot the estimators from the fitted object
> plotEstimator(fit)
Error in image.default(x = 1.5, y = z, z = matrix(z, nrow = 1, ncol = length(col)), :
increasing 'x' and 'y' values expected
Calls: plotEstimator -> vertical.image.legend -> image -> image.default
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0-1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-patched-solaris-x86
Version: 1.0-0
Check: installed package size
Result: NOTE
installed size is 15.9Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 13.7Mb
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.0-0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BDgraph’ ‘data.table’ ‘gRbase’ ‘plyr’ ‘scrime’
All declared Imports should be used.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64