Last updated on 2020-02-07 06:47:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1.2 | 120.44 | 367.56 | 488.00 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 3.1.2 | 92.71 | 284.04 | 376.75 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 3.1.2 | 674.08 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1.2 | 661.91 | WARN | |||
| r-devel-windows-ix86+x86_64 | 3.1.2 | 356.00 | 687.00 | 1043.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 3.1.2 | 335.00 | 689.00 | 1024.00 | NOTE | |
| r-patched-linux-x86_64 | 3.1.2 | 97.33 | 318.31 | 415.64 | NOTE | |
| r-patched-solaris-x86 | 3.1.2 | 4.80 | ERROR | |||
| r-release-linux-x86_64 | 3.1.2 | 92.43 | 317.89 | 410.32 | NOTE | |
| r-release-windows-ix86+x86_64 | 3.1.2 | 269.00 | 531.00 | 800.00 | NOTE | |
| r-release-osx-x86_64 | 3.1.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 3.1.2 | 162.00 | 387.00 | 549.00 | NOTE | |
| r-oldrel-osx-x86_64 | 3.1.2 | NOTE |
Version: 3.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 3.1.2
Check: Rd \usage sections
Result: WARN
Documented arguments not in \usage in documentation object 'SubsetByBarcodeInflections':
'...'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.1.2
Check: package dependencies
Result: WARN
Packages suggested but not available for checking:
'loomR', 'MAST', 'monocle'
Imports includes 36 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Requires orphaned package: ‘SDMTools’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.1.2
Check: installed package size
Result: NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 7.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 3.1.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'loomR', 'MAST', 'monocle'
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.1.2
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [42s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(Seurat)
>
> test_check("Seurat")
-- 1. Failure: FindConservedMarkers works (@test_differential_expression.R#237)
markers[1, "g2_pct.1"] not equal to 0.062.
1/1 mismatches
[1] 0.063 - 0.062 == 0.001
-- 2. Failure: FindConservedMarkers handles missing idents in certain groups (@t
markers.missing[1, "g2_pct.1"] not equal to 0.062.
1/1 mismatches
[1] 0.063 - 0.062 == 0.001
== testthat results ===========================================================
[ OK: 412 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
1. Failure: FindConservedMarkers works (@test_differential_expression.R#237)
2. Failure: FindConservedMarkers handles missing idents in certain groups (@test_differential_expression.R#269)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 3.1.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘RcppAnnoy’
Packages suggested but not available for checking: 'loomR', 'monocle'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-solaris-x86
Version: 3.1.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'loomR', 'SingleCellExperiment', 'MAST', 'monocle'
Flavor: r-release-osx-x86_64
Version: 3.1.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘loomR’ ‘SingleCellExperiment’ ‘MAST’ ‘rtracklayer’ ‘monocle’
Flavor: r-oldrel-osx-x86_64