CRAN Package Check Results for Package iRefR

Last updated on 2020-02-15 22:50:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.13 6.09 66.18 72.27 NOTE
r-devel-linux-x86_64-debian-gcc 1.13 4.69 51.71 56.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.13 85.91 NOTE
r-devel-linux-x86_64-fedora-gcc 1.13 83.95 NOTE
r-devel-windows-ix86+x86_64 1.13 11.00 81.00 92.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 1.13 18.00 103.00 121.00 NOTE
r-patched-linux-x86_64 1.13 4.40 60.06 64.46 NOTE
r-patched-solaris-x86 1.13 112.90 NOTE
r-release-linux-x86_64 1.13 4.19 59.50 63.69 NOTE
r-release-windows-ix86+x86_64 1.13 11.00 73.00 84.00 NOTE
r-release-osx-x86_64 1.13 NOTE
r-oldrel-windows-ix86+x86_64 1.13 5.00 68.00 73.00 ERROR
r-oldrel-osx-x86_64 1.13 NOTE

Check Details

Version: 1.13
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'RBGL' 'graph' 'igraph'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.13
Check: R code for possible problems
Result: NOTE
    convert_MITAB_to_edgeList: no visible global function definition for
     'combn'
    convert_edgeList_to_graph: no visible global function definition for
     'ftM2graphNEL'
    convert_edgeList_to_graph: no visible global function definition for
     'graph.data.frame'
    convert_graph_to_edgeList: no visible global function definition for
     'edgeWeights'
    convert_graph_to_edgeList: no visible global function definition for
     'get.edgelist'
    convert_graph_to_edgeList: no visible global function definition for
     'E'
    create_id_conversion_table: no visible global function definition for
     'write.table'
    get_irefindex: no visible global function definition for 'read.table'
    get_irefindex: no visible global function definition for
     'download.file'
    get_irefindex: no visible global function definition for 'unzip'
    summary_graph: no visible global function definition for
     'connectedComp'
    summary_graph: no visible global function definition for 'subGraph'
    summary_graph: no visible global function definition for 'clusters'
    summary_graph: no visible global function definition for 'subgraph'
    summary_graph: no visible global function definition for 'plot'
    summary_graph: no visible binding for global variable
     'layout.fruchterman.reingold'
    Undefined global functions or variables:
     E clusters combn connectedComp download.file edgeWeights ftM2graphNEL
     get.edgelist graph.data.frame layout.fruchterman.reingold plot
     read.table subGraph subgraph unzip write.table
    Consider adding
     importFrom("graphics", "plot")
     importFrom("utils", "combn", "download.file", "read.table", "unzip",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.13
Check: examples
Result: ERROR
    Running examples in 'iRefR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: convert_MITAB_to_edgeList
    > ### Title: Convert MITAB format to edgeList format
    > ### Aliases: convert_MITAB_to_edgeList
    >
    > ### ** Examples
    >
    > ## get tables
    > irefindex_curr_ecoli = get_irefindex("562", "13.0", tempdir())
    Downloading iRefIndex file...
    trying URL 'http://irefindex.org/download/irefindex/data/archive/release_13.0/psi_mitab/MITAB2.6/562.mitab.08122013.txt.zip'
    Warning in download.file(url, destfile = zipfile) :
     InternetOpenUrl failed: 'Eine Umleitungsanforderung √§ndert eine nicht sichere in eine sichere Verbindung.'
    Error in download.file(url, destfile = zipfile) :
     cannot open URL 'http://irefindex.org/download/irefindex/data/archive/release_13.0/psi_mitab/MITAB2.6/562.mitab.08122013.txt.zip'
    Calls: get_irefindex -> download.file
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64