Last updated on 2020-02-19 10:48:55 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.2 | 140.43 | 152.60 | 293.03 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 0.4.2 | 104.25 | 118.08 | 222.33 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 0.4.2 | 389.74 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.2 | 384.77 | WARN | |||
| r-devel-windows-ix86+x86_64 | 0.4.2 | 238.00 | 229.00 | 467.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.4.2 | 374.00 | 261.00 | 635.00 | OK | |
| r-patched-linux-x86_64 | 0.4.2 | 117.11 | 149.01 | 266.12 | OK | |
| r-patched-solaris-x86 | 0.4.2 | 510.90 | OK | |||
| r-release-linux-x86_64 | 0.4.2 | 118.83 | 150.18 | 269.01 | OK | |
| r-release-windows-ix86+x86_64 | 0.4.2 | 238.00 | 168.00 | 406.00 | OK | |
| r-release-osx-x86_64 | 0.4.2 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4.2 | 203.00 | 208.00 | 411.00 | OK | |
| r-oldrel-osx-x86_64 | 0.4.2 | NOTE |
Version: 0.4.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
sar.cpp:210:32: warning: explicitly assigning value of variable of type 'arma::sp_mat' (aka 'SpMat<double>') to itself [-Wself-assign-overloaded]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64
Version: 0.4.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'hsar.Rmd' using knitr
Loading required package: sp
Checking rgeos availability: TRUE
rgdal: version: 1.4-8, (SVN revision 845)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
Path to GDAL shared files:
GDAL binary built with GEOS: TRUE
Loaded PROJ.4 runtime: Rel. 6.3.0, January 1st, 2020, [PJ_VERSION: 630]
Path to PROJ.4 shared files: (autodetected)
Linking to sp version: 1.3-2
rgeos version: 0.5-2, (SVN revision 621)
GEOS runtime version: 3.8.0-CAPI-1.13.1
Linking to sp version: 1.3-2
Polygon checking: TRUE
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 6.3.0
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
HSAR
--- call from context ---
get_X_from_frame(frame)
--- call from argument ---
if (class(X) == "try-error") stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
--- R stacktrace ---
where 1: get_X_from_frame(frame)
where 2: hsar(res.formula, data = model.data.sp@data, W = W, M = M, Delta = Delta,
burnin = 100, Nsim = 200)
where 3: eval(expr, envir, enclos)
where 4: eval(expr, envir, enclos)
where 5: withVisible(eval(expr, envir, enclos))
where 6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 10: evaluate::evaluate(...)
where 11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 13: block_exec(params)
where 14: call_block(x)
where 15: process_group.block(group)
where 16: process_group(group)
where 17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 18: process_file(text, output)
where 19: knit(input, text = text, envir = envir, quiet = quiet)
where 20: knit2html(..., force_v1 = TRUE)
where 21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$",
file)) knit2pandoc else knit)(file, encoding = encoding,
quiet = quiet, envir = globalenv(), ...)
where 22: engine$weave(file, quiet = quiet, encoding = enc)
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 27: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HSAR.Rcheck/vign_test/HSAR",
ser_elibs = "/tmp/Rtmpe4bMy5/file3fce2efc3f18.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (frame)
{
X <- try(suppressWarnings(model.matrix(object = attr(frame,
"terms"), data = frame)), silent = TRUE)
if (class(X) == "try-error")
stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
return(X)
}
<bytecode: 0x1284a600>
<environment: namespace:HSAR>
--- function search by body ---
Function get_X_from_frame in namespace HSAR has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 197-201 (hsar.Rmd)
Error: processing vignette 'hsar.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building 'hsar.Rmd'
SUMMARY: processing the following file failed:
'hsar.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘hsar.Rmd’ using knitr
Loading required package: sp
Checking rgeos availability: TRUE
rgdal: version: 1.4-8, (SVN revision 845)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
Path to GDAL shared files:
GDAL binary built with GEOS: TRUE
Loaded PROJ.4 runtime: Rel. 6.3.0, January 1st, 2020, [PJ_VERSION: 630]
Path to PROJ.4 shared files: (autodetected)
Linking to sp version: 1.3-2
rgeos version: 0.5-2, (SVN revision 621)
GEOS runtime version: 3.8.0-CAPI-1.13.1
Linking to sp version: 1.3-2
Polygon checking: TRUE
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 6.3.0
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
HSAR
--- call from context ---
get_X_from_frame(frame)
--- call from argument ---
if (class(X) == "try-error") stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
--- R stacktrace ---
where 1: get_X_from_frame(frame)
where 2: hsar(res.formula, data = model.data.sp@data, W = W, M = M, Delta = Delta,
burnin = 100, Nsim = 200)
where 3: eval(expr, envir, enclos)
where 4: eval(expr, envir, enclos)
where 5: withVisible(eval(expr, envir, enclos))
where 6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 10: evaluate::evaluate(...)
where 11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 13: block_exec(params)
where 14: call_block(x)
where 15: process_group.block(group)
where 16: process_group(group)
where 17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 18: process_file(text, output)
where 19: knit(input, text = text, envir = envir, quiet = quiet)
where 20: knit2html(..., force_v1 = TRUE)
where 21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$",
file)) knit2pandoc else knit)(file, encoding = encoding,
quiet = quiet, envir = globalenv(), ...)
where 22: engine$weave(file, quiet = quiet, encoding = enc)
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 27: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HSAR.Rcheck/vign_test/HSAR",
ser_elibs = "/home/hornik/tmp/scratch/RtmpbBw6LJ/file5fb86a0dcaec.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (frame)
{
X <- try(suppressWarnings(model.matrix(object = attr(frame,
"terms"), data = frame)), silent = TRUE)
if (class(X) == "try-error")
stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
return(X)
}
<bytecode: 0x55ee0533e870>
<environment: namespace:HSAR>
--- function search by body ---
Function get_X_from_frame in namespace HSAR has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 197-201 (hsar.Rmd)
Error: processing vignette 'hsar.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘hsar.Rmd’
SUMMARY: processing the following file failed:
‘hsar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.2
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
libs 10.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.4.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘hsar.Rmd’ using knitr
Loading required package: sp
Checking rgeos availability: TRUE
rgdal: version: 1.4-8, (SVN revision 845)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21
Path to GDAL shared files: /usr/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
Path to PROJ.4 shared files: (autodetected)
Linking to sp version: 1.3-2
rgeos version: 0.5-2, (SVN revision 621)
GEOS runtime version: 3.7.1-CAPI-1.11.1
Linking to sp version: 1.3-2
Polygon checking: TRUE
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
HSAR
--- call from context ---
get_X_from_frame(frame)
--- call from argument ---
if (class(X) == "try-error") stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
--- R stacktrace ---
where 1: get_X_from_frame(frame)
where 2: hsar(res.formula, data = model.data.sp@data, W = W, M = M, Delta = Delta,
burnin = 100, Nsim = 200)
where 3: eval(expr, envir, enclos)
where 4: eval(expr, envir, enclos)
where 5: withVisible(eval(expr, envir, enclos))
where 6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 10: evaluate::evaluate(...)
where 11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 13: block_exec(params)
where 14: call_block(x)
where 15: process_group.block(group)
where 16: process_group(group)
where 17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 18: process_file(text, output)
where 19: knit(input, text = text, envir = envir, quiet = quiet)
where 20: knit2html(..., force_v1 = TRUE)
where 21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$",
file)) knit2pandoc else knit)(file, encoding = encoding,
quiet = quiet, envir = globalenv(), ...)
where 22: engine$weave(file, quiet = quiet, encoding = enc)
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 27: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/HSAR.Rcheck/vign_test/HSAR",
ser_elibs = "/tmp/Rtmpv20HDr/file2dee660ea01b.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (frame)
{
X <- try(suppressWarnings(model.matrix(object = attr(frame,
"terms"), data = frame)), silent = TRUE)
if (class(X) == "try-error")
stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
return(X)
}
<bytecode: 0x13055e00>
<environment: namespace:HSAR>
--- function search by body ---
Function get_X_from_frame in namespace HSAR has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 197-201 (hsar.Rmd)
Error: processing vignette 'hsar.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘hsar.Rmd’
SUMMARY: processing the following file failed:
‘hsar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘hsar.Rmd’ using knitr
Loading required package: sp
Checking rgeos availability: TRUE
rgdal: version: 1.4-8, (SVN revision 845)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21
Path to GDAL shared files: /usr/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
Path to PROJ.4 shared files: (autodetected)
Linking to sp version: 1.3-2
rgeos version: 0.5-2, (SVN revision 621)
GEOS runtime version: 3.7.1-CAPI-1.11.1
Linking to sp version: 1.3-2
Polygon checking: TRUE
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
HSAR
--- call from context ---
get_X_from_frame(frame)
--- call from argument ---
if (class(X) == "try-error") stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
--- R stacktrace ---
where 1: get_X_from_frame(frame)
where 2: hsar(res.formula, data = model.data.sp@data, W = W, M = M, Delta = Delta,
burnin = 100, Nsim = 200)
where 3: eval(expr, envir, enclos)
where 4: eval(expr, envir, enclos)
where 5: withVisible(eval(expr, envir, enclos))
where 6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 10: evaluate::evaluate(...)
where 11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 13: block_exec(params)
where 14: call_block(x)
where 15: process_group.block(group)
where 16: process_group(group)
where 17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 18: process_file(text, output)
where 19: knit(input, text = text, envir = envir, quiet = quiet)
where 20: knit2html(..., force_v1 = TRUE)
where 21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$",
file)) knit2pandoc else knit)(file, encoding = encoding,
quiet = quiet, envir = globalenv(), ...)
where 22: engine$weave(file, quiet = quiet, encoding = enc)
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 27: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/HSAR.Rcheck/vign_test/HSAR",
ser_elibs = "/tmp/RtmpLh80NJ/file20501afe8405.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (frame)
{
X <- try(suppressWarnings(model.matrix(object = attr(frame,
"terms"), data = frame)), silent = TRUE)
if (class(X) == "try-error")
stop("The covariate matrix contains inappropriate values.",
call. = FALSE)
return(X)
}
<bytecode: 0x116a7a98>
<environment: namespace:HSAR>
--- function search by body ---
Function get_X_from_frame in namespace HSAR has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 197-201 (hsar.Rmd)
Error: processing vignette 'hsar.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘hsar.Rmd’
SUMMARY: processing the following file failed:
‘hsar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc