Last updated on 2020-02-19 10:49:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 3.49 | 47.37 | 50.86 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 2.95 | 37.82 | 40.77 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 63.13 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 60.86 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.1.1 | 8.00 | 58.00 | 66.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1.1 | 13.00 | 61.00 | 74.00 | OK | |
| r-patched-linux-x86_64 | 0.1.1 | 2.90 | 40.13 | 43.03 | OK | |
| r-patched-solaris-x86 | 0.1.1 | 80.70 | NOTE | |||
| r-release-linux-x86_64 | 0.1.1 | 2.86 | 40.33 | 43.19 | OK | |
| r-release-windows-ix86+x86_64 | 0.1.1 | 7.00 | 53.00 | 60.00 | OK | |
| r-release-osx-x86_64 | 0.1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.1 | 3.00 | 52.00 | 55.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.1 | NOTE |
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in 'pointdexter-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LabelPointsWithinPolygons
> ### Title: Labels points located inside a polygon
> ### Aliases: LabelPointsWithinPolygons
>
> ### ** Examples
>
> ## SpatialPolygonsDataFrame, one polygon example ## -----
>
> # load necessary data ----
> data("city_boundary_spdf")
> data("cps_sy1819")
>
> # obtain boundaries for the City of Chicago ----
> boundaries <-
+ GetPolygonBoundaries(my.polygon = city_boundary_spdf)
>
> # identify which schools lie within the City of Chicago -----
> cps_sy1819$citywide <-
+ LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude
+ , lat = cps_sy1819$school_latitude
+ , polygon.boundaries = boundaries)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x4b94260>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(polygon.boundaries) != "matrix") { :
the condition has length > 1
Calls: LabelPointsWithinPolygons
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [6s/6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pointdexter)
>
> test_check("pointdexter")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval_bare(expr, quo_get_env(quo))
where 3: quasi_label(enquo(object), label, arg = "object")
where 4 at testthat/test-LabelPointsWithinPolygons_output.R#18: expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
where 5: eval(code, test_env)
where 6: eval(code, test_env)
where 7: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 11: doTryCatch(return(expr), name, parentenv, handler)
where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 13: tryCatchList(expr, classes, parentenv, handlers)
where 14: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 15: test_code(desc, code, env = parent.frame())
where 16 at testthat/test-LabelPointsWithinPolygons_output.R#17: test_that("polygon.boundaries as a matrix returns a logical vector",
{
expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
})
where 17: eval(code, test_env)
where 18: eval(code, test_env)
where 19: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 27: test_code(NULL, exprs, env)
where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 29: force(code)
where 30: doWithOneRestart(return(expr), restart)
where 31: withOneRestart(expr, restarts[[1L]])
where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 34: FUN(X[[i]], ...)
where 35: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 36: force(code)
where 37: doWithOneRestart(return(expr), restart)
where 38: withOneRestart(expr, restarts[[1L]])
where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 40: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 43: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 44: test_check("pointdexter")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x34a9f78>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
-- 1. Error: polygon.boundaries as a matrix returns a logical vector (@test-Labe
the condition has length > 1
Backtrace:
1. testthat::expect_is(...)
4. pointdexter::LabelPointsWithinPolygons(...)
== testthat results ===========================================================
[ OK: 27 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: polygon.boundaries as a matrix returns a logical vector (@test-LabelPointsWithinPolygons_output.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'introduction-to-pointdexter.Rmd' using rmarkdown
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval(expr, envir, enclos)
where 3: eval(expr, envir, enclos)
where 4: withVisible(eval(expr, envir, enclos))
where 5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 9: evaluate::evaluate(...)
where 10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 12: block_exec(params)
where 13: call_block(x)
where 14: process_group.block(group)
where 15: process_group(group)
where 16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 17: process_file(text, output)
where 18: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 19: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...)
where 20: vweave_rmarkdown(...)
where 21: engine$weave(file, quiet = quiet, encoding = enc)
where 22: doTryCatch(return(expr), name, parentenv, handler)
where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 24: tryCatchList(expr, classes, parentenv, handlers)
where 25: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 26: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pointdexter.Rcheck/vign_test/pointdexter",
ser_elibs = "/tmp/Rtmpuw4eND/file263a4e8c26e9.rds")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x63a3930>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 130-139 (introduction-to-pointdexter.Rmd)
Error: processing vignette 'introduction-to-pointdexter.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building 'introduction-to-pointdexter.Rmd'
SUMMARY: processing the following file failed:
'introduction-to-pointdexter.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘pointdexter-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LabelPointsWithinPolygons
> ### Title: Labels points located inside a polygon
> ### Aliases: LabelPointsWithinPolygons
>
> ### ** Examples
>
> ## SpatialPolygonsDataFrame, one polygon example ## -----
>
> # load necessary data ----
> data("city_boundary_spdf")
> data("cps_sy1819")
>
> # obtain boundaries for the City of Chicago ----
> boundaries <-
+ GetPolygonBoundaries(my.polygon = city_boundary_spdf)
>
> # identify which schools lie within the City of Chicago -----
> cps_sy1819$citywide <-
+ LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude
+ , lat = cps_sy1819$school_latitude
+ , polygon.boundaries = boundaries)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x55c7cdc40748>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(polygon.boundaries) != "matrix") { :
the condition has length > 1
Calls: LabelPointsWithinPolygons
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pointdexter)
>
> test_check("pointdexter")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval_bare(expr, quo_get_env(quo))
where 3: quasi_label(enquo(object), label, arg = "object")
where 4 at testthat/test-LabelPointsWithinPolygons_output.R#18: expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
where 5: eval(code, test_env)
where 6: eval(code, test_env)
where 7: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 11: doTryCatch(return(expr), name, parentenv, handler)
where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 13: tryCatchList(expr, classes, parentenv, handlers)
where 14: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 15: test_code(desc, code, env = parent.frame())
where 16 at testthat/test-LabelPointsWithinPolygons_output.R#17: test_that("polygon.boundaries as a matrix returns a logical vector",
{
expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
})
where 17: eval(code, test_env)
where 18: eval(code, test_env)
where 19: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 27: test_code(NULL, exprs, env)
where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 29: force(code)
where 30: doWithOneRestart(return(expr), restart)
where 31: withOneRestart(expr, restarts[[1L]])
where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 34: FUN(X[[i]], ...)
where 35: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 36: force(code)
where 37: doWithOneRestart(return(expr), restart)
where 38: withOneRestart(expr, restarts[[1L]])
where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 40: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 43: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 44: test_check("pointdexter")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x560b198b1e18>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: polygon.boundaries as a matrix returns a logical vector (@test-Labe
the condition has length > 1
Backtrace:
1. testthat::expect_is(...)
4. pointdexter::LabelPointsWithinPolygons(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 27 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: polygon.boundaries as a matrix returns a logical vector (@test-LabelPointsWithinPolygons_output.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘introduction-to-pointdexter.Rmd’ using rmarkdown
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval(expr, envir, enclos)
where 3: eval(expr, envir, enclos)
where 4: withVisible(eval(expr, envir, enclos))
where 5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 9: evaluate::evaluate(...)
where 10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 12: block_exec(params)
where 13: call_block(x)
where 14: process_group.block(group)
where 15: process_group(group)
where 16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 17: process_file(text, output)
where 18: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 19: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...)
where 20: vweave_rmarkdown(...)
where 21: engine$weave(file, quiet = quiet, encoding = enc)
where 22: doTryCatch(return(expr), name, parentenv, handler)
where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 24: tryCatchList(expr, classes, parentenv, handlers)
where 25: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 26: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pointdexter.Rcheck/vign_test/pointdexter",
ser_elibs = "/home/hornik/tmp/scratch/RtmpTgMkbK/file712c28d66c0f.rds")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x5619d61797c8>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 130-139 (introduction-to-pointdexter.Rmd)
Error: processing vignette 'introduction-to-pointdexter.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘introduction-to-pointdexter.Rmd’
SUMMARY: processing the following file failed:
‘introduction-to-pointdexter.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: data for non-ASCII characters
Result: NOTE
Note: found 328 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘pointdexter-Ex.R’ failed
The error most likely occurred in:
> ### Name: LabelPointsWithinPolygons
> ### Title: Labels points located inside a polygon
> ### Aliases: LabelPointsWithinPolygons
>
> ### ** Examples
>
> ## SpatialPolygonsDataFrame, one polygon example ## -----
>
> # load necessary data ----
> data("city_boundary_spdf")
> data("cps_sy1819")
>
> # obtain boundaries for the City of Chicago ----
> boundaries <-
+ GetPolygonBoundaries(my.polygon = city_boundary_spdf)
>
> # identify which schools lie within the City of Chicago -----
> cps_sy1819$citywide <-
+ LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude
+ , lat = cps_sy1819$school_latitude
+ , polygon.boundaries = boundaries)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x3978890>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(polygon.boundaries) != "matrix") { :
the condition has length > 1
Calls: LabelPointsWithinPolygons
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pointdexter)
>
> test_check("pointdexter")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval_bare(expr, quo_get_env(quo))
where 3: quasi_label(enquo(object), label, arg = "object")
where 4 at testthat/test-LabelPointsWithinPolygons_output.R#18: expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
where 5: eval(code, test_env)
where 6: eval(code, test_env)
where 7: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 11: doTryCatch(return(expr), name, parentenv, handler)
where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 13: tryCatchList(expr, classes, parentenv, handlers)
where 14: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 15: test_code(desc, code, env = parent.frame())
where 16 at testthat/test-LabelPointsWithinPolygons_output.R#17: test_that("polygon.boundaries as a matrix returns a logical vector",
{
expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
})
where 17: eval(code, test_env)
where 18: eval(code, test_env)
where 19: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 27: test_code(NULL, exprs, env)
where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 29: force(code)
where 30: doWithOneRestart(return(expr), restart)
where 31: withOneRestart(expr, restarts[[1L]])
where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 34: FUN(X[[i]], ...)
where 35: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 36: force(code)
where 37: doWithOneRestart(return(expr), restart)
where 38: withOneRestart(expr, restarts[[1L]])
where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 40: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 43: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 44: test_check("pointdexter")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x2cc0a98>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: polygon.boundaries as a matrix returns a logical vector (@test-Labe
the condition has length > 1
Backtrace:
1. testthat::expect_is(...)
4. pointdexter::LabelPointsWithinPolygons(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 27 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: polygon.boundaries as a matrix returns a logical vector (@test-LabelPointsWithinPolygons_output.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘introduction-to-pointdexter.Rmd’ using rmarkdown
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval(expr, envir, enclos)
where 3: eval(expr, envir, enclos)
where 4: withVisible(eval(expr, envir, enclos))
where 5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 9: evaluate::evaluate(...)
where 10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 12: block_exec(params)
where 13: call_block(x)
where 14: process_group.block(group)
where 15: process_group(group)
where 16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 17: process_file(text, output)
where 18: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 19: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...)
where 20: vweave_rmarkdown(...)
where 21: engine$weave(file, quiet = quiet, encoding = enc)
where 22: doTryCatch(return(expr), name, parentenv, handler)
where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 24: tryCatchList(expr, classes, parentenv, handlers)
where 25: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 26: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/pointdexter.Rcheck/vign_test/pointdexter",
ser_elibs = "/tmp/Rtmpkb0Y9E/file8dec6cb154cb.rds")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x67d9f50>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 130-139 (introduction-to-pointdexter.Rmd)
Error: processing vignette 'introduction-to-pointdexter.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘introduction-to-pointdexter.Rmd’
SUMMARY: processing the following file failed:
‘introduction-to-pointdexter.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘pointdexter-Ex.R’ failed
The error most likely occurred in:
> ### Name: LabelPointsWithinPolygons
> ### Title: Labels points located inside a polygon
> ### Aliases: LabelPointsWithinPolygons
>
> ### ** Examples
>
> ## SpatialPolygonsDataFrame, one polygon example ## -----
>
> # load necessary data ----
> data("city_boundary_spdf")
> data("cps_sy1819")
>
> # obtain boundaries for the City of Chicago ----
> boundaries <-
+ GetPolygonBoundaries(my.polygon = city_boundary_spdf)
>
> # identify which schools lie within the City of Chicago -----
> cps_sy1819$citywide <-
+ LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude
+ , lat = cps_sy1819$school_latitude
+ , polygon.boundaries = boundaries)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundaries)
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x3d9a1b8>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(polygon.boundaries) != "matrix") { :
the condition has length > 1
Calls: LabelPointsWithinPolygons
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pointdexter)
>
> test_check("pointdexter")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval_bare(expr, quo_get_env(quo))
where 3: quasi_label(enquo(object), label, arg = "object")
where 4 at testthat/test-LabelPointsWithinPolygons_output.R#18: expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
where 5: eval(code, test_env)
where 6: eval(code, test_env)
where 7: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 11: doTryCatch(return(expr), name, parentenv, handler)
where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 13: tryCatchList(expr, classes, parentenv, handlers)
where 14: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 15: test_code(desc, code, env = parent.frame())
where 16 at testthat/test-LabelPointsWithinPolygons_output.R#17: test_that("polygon.boundaries as a matrix returns a logical vector",
{
expect_is(LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary),
"logical")
})
where 17: eval(code, test_env)
where 18: eval(code, test_env)
where 19: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 23: doTryCatch(return(expr), name, parentenv, handler)
where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 25: tryCatchList(expr, classes, parentenv, handlers)
where 26: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 27: test_code(NULL, exprs, env)
where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 29: force(code)
where 30: doWithOneRestart(return(expr), restart)
where 31: withOneRestart(expr, restarts[[1L]])
where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 34: FUN(X[[i]], ...)
where 35: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 36: force(code)
where 37: doWithOneRestart(return(expr), restart)
where 38: withOneRestart(expr, restarts[[1L]])
where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 40: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 43: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 44: test_check("pointdexter")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x2d8d450>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: polygon.boundaries as a matrix returns a logical vector (@test-Labe
the condition has length > 1
Backtrace:
1. testthat::expect_is(...)
4. pointdexter::LabelPointsWithinPolygons(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 27 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: polygon.boundaries as a matrix returns a logical vector (@test-LabelPointsWithinPolygons_output.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘introduction-to-pointdexter.Rmd’ using rmarkdown
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
pointdexter
--- call from context ---
LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
--- call from argument ---
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
--- R stacktrace ---
where 1: LabelPointsWithinPolygons(lng = cps_sy1819$school_longitude,
lat = cps_sy1819$school_latitude, polygon.boundaries = boundary)
where 2: eval(expr, envir, enclos)
where 3: eval(expr, envir, enclos)
where 4: withVisible(eval(expr, envir, enclos))
where 5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
error = eHandler, message = mHandler)
where 6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
enclos)), warning = wHandler, error = eHandler, message = mHandler))
where 7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
where 8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
debug = debug, last = i == length(out), use_try = stop_on_error !=
2L, keep_warning = keep_warning, keep_message = keep_message,
output_handler = output_handler, include_timing = include_timing)
where 9: evaluate::evaluate(...)
where 10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
options$include) 0L else 2L, output_handler = knit_handlers(options$render,
options))
where 11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
stop_on_error = if (options$error && options$include) 0L else 2L,
output_handler = knit_handlers(options$render, options)))
where 12: block_exec(params)
where 13: call_block(x)
where 14: process_group.block(group)
where 15: process_group(group)
where 16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
error = function(e) {
setwd(wd)
cat(res, sep = "\n", file = output %n% "")
message("Quitting from lines ", paste(current_lines(i),
collapse = "-"), " (", knit_concord$get("infile"),
") ")
})
where 17: process_file(text, output)
where 18: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 19: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...)
where 20: vweave_rmarkdown(...)
where 21: engine$weave(file, quiet = quiet, encoding = enc)
where 22: doTryCatch(return(expr), name, parentenv, handler)
where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 24: tryCatchList(expr, classes, parentenv, handlers)
where 25: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
outputs <- c(outputs, output)
}, error = function(e) {
thisOK <<- FALSE
fails <<- c(fails, file)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 26: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/pointdexter.Rcheck/vign_test/pointdexter",
ser_elibs = "/tmp/RtmpNYwF9a/file5bdbad0ac05.rds")
--- value of length: 2 type: logical ---
[1] FALSE TRUE
--- function from context ---
function (lng, lat, polygon.boundaries)
{
if (is.numeric(lng) == FALSE) {
stop("lng must be a numeric vector.")
}
if (is.numeric(lat) == FALSE) {
stop("lat must be a numeric vector.")
}
if (length(lng) != length(lat)) {
stop("lng and lat must be of equal length.")
}
if (any(is.na(lng))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (any(is.na(lat))) {
stop("Filter lng and lat so that neither contain any NA values.")
}
if (class(polygon.boundaries) != "matrix") {
if (!is.list(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices.\n See ?GetPolygonBoundaries for more information.")
}
}
if (class(polygon.boundaries) != "list") {
if (!is.matrix(polygon.boundaries)) {
stop("polygon.boundaries must either be of class matrix or a list of matrices. See ?GetPolygonBoundaries for more information.")
}
}
if (is.list(polygon.boundaries) & is.null(names(polygon.boundaries))) {
stop("Please label the matrices within polygon.boundaries. See ?names for more details.")
}
df <- data.frame(x = lng, y = lat, index = 1:length(lng))
if (is.matrix(polygon.boundaries)) {
return(df$index %in% splancs::inpip(pts = df, poly = polygon.boundaries,
bound = NULL))
}
else {
temp <- lapply(X = polygon.boundaries, FUN = function(i) splancs::inpip(pts = df,
poly = i, bound = NULL))
names(temp) <- names(polygon.boundaries)
temp <- utils::stack(temp)
names(temp)[names(temp) == "values"] <- "index"
names(temp)[names(temp) == "ind"] <- "label"
temp$label <- as.character(temp$label)
if (nrow(df) > nrow(temp)) {
no.label.points <- data.frame(index = df$index[which(!df$index %in%
temp$index)], label = NA)
temp <- rbind(temp, no.label.points)
}
temp <- temp[order(temp$index), ]
return(temp$label)
}
}
<bytecode: 0x69b13a8>
<environment: namespace:pointdexter>
--- function search by body ---
Function LabelPointsWithinPolygons in namespace pointdexter has this body.
----------- END OF FAILURE REPORT --------------
Quitting from lines 130-139 (introduction-to-pointdexter.Rmd)
Error: processing vignette 'introduction-to-pointdexter.Rmd' failed with diagnostics:
the condition has length > 1
--- failed re-building ‘introduction-to-pointdexter.Rmd’
SUMMARY: processing the following file failed:
‘introduction-to-pointdexter.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc