Last updated on 2020-04-09 09:48:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 1.14 | 2.50 | 3.64 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 0.82 | 2.01 | 2.83 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 162.11 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 160.56 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 20.00 | 153.00 | 173.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2.2 | 21.00 | 89.00 | 110.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.2 | 1.13 | 2.69 | 3.82 | ERROR | |
| r-patched-osx-x86_64 | 1.2.2 | ERROR | ||||
| r-patched-solaris-x86 | 1.2.2 | 209.00 | ERROR | |||
| r-release-linux-x86_64 | 1.2.2 | 7.04 | 104.48 | 111.52 | WARN | |
| r-release-windows-ix86+x86_64 | 1.2.2 | 20.00 | 182.00 | 202.00 | WARN | |
| r-release-osx-x86_64 | 1.2.2 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 20.00 | 134.00 | 154.00 | WARN | |
| r-oldrel-osx-x86_64 | 1.2.2 | ERROR |
Version: 1.2.2
Check: package dependencies
Result: ERROR
Package required but not available: 'ggtree'
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-osx-x86_64
Version: 1.2.2
Check: package dependencies
Result: NOTE
Imports includes 22 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/107s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(genBaRcode)
>
> test_check("genBaRcode")
── 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ──────
test_dat$shared not equal to res$shared.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ──────
test_dat$unique_sample1 not equal to res$unique_sample1.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ──────
test_dat$unique_sample2 not equal to res$unique_sample2.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 47 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 3 ]
1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
`i` must have one dimension, not 2.
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-ix86+x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(genBaRcode)
>
> test_check("genBaRcode")
── 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ──────
test_dat$shared not equal to res$shared.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ──────
test_dat$unique_sample1 not equal to res$unique_sample1.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ──────
test_dat$unique_sample2 not equal to res$unique_sample2.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 47 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 3 ]
1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(genBaRcode)
>
> test_check("genBaRcode")
-- 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ------
test_dat$shared not equal to res$shared.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ------
test_dat$unique_sample1 not equal to res$unique_sample1.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ------
test_dat$unique_sample2 not equal to res$unique_sample2.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 4. Error: (unknown) (@test_raw_data_functions.R#3) -------------------------
package 'S4Vectors' could not be loaded
Backtrace:
1. base::library(ShortRead)
2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
3. base::library(...)
4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
== testthat results ===========================================================
[ OK: 14 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ]
1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
4. Error: (unknown) (@test_raw_data_functions.R#3)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'genBaRcode_GUI_Vignette.Rmd' using rmarkdown
--- finished re-building 'genBaRcode_GUI_Vignette.Rmd'
--- re-building 'genBaRcode_Vignette.Rmd' using rmarkdown
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
.onLoad failed in loadNamespace() for 'S4Vectors', details:
call: validObject(.Object)
error: invalid class "LLint" object: superclass "integer_OR_LLint" not defined in the environment of the object's class
--- failed re-building 'genBaRcode_Vignette.Rmd'
SUMMARY: processing the following file failed:
'genBaRcode_Vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(genBaRcode)
>
> test_check("genBaRcode")
-- 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ------
test_dat$shared not equal to res$shared.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ------
test_dat$unique_sample1 not equal to res$unique_sample1.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ------
test_dat$unique_sample2 not equal to res$unique_sample2.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
-- 4. Error: (unknown) (@test_raw_data_functions.R#3) -------------------------
package 'S4Vectors' could not be loaded
Backtrace:
1. base::library(ShortRead)
2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
3. base::library(...)
4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
== testthat results ===========================================================
[ OK: 14 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ]
1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
4. Error: (unknown) (@test_raw_data_functions.R#3)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(genBaRcode)
>
> test_check("genBaRcode")
── 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ──────
test_dat$shared not equal to res$shared.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ──────
test_dat$unique_sample1 not equal to res$unique_sample1.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
── 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ──────
test_dat$unique_sample2 not equal to res$unique_sample2.
Component "barcode": Modes: character, numeric
Component "barcode": Attributes: < target is NULL, current is list >
Component "barcode": target is character, current is factor
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 47 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 3 ]
1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
`i` must have one dimension, not 2.
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
`i` must have one dimension, not 2.
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
> test_check("genBaRcode")
── 1. Error: (unknown) (@test_raw_data_functions.R#3) ─────────────────────────
package 'GenomeInfoDb' could not be loaded
Backtrace:
1. base::library(ShortRead)
2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
3. base::library(...)
4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 17 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: (unknown) (@test_raw_data_functions.R#3)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
there is no package called 'GenomeInfoDbData'
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
`i` must have one dimension, not 2.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.2.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘ShortRead’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-osx-x86_64