Last updated on 2020-04-30 06:47:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.7 | 15.05 | 298.81 | 313.86 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.7.7 | 10.61 | 237.16 | 247.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.7.7 | 407.01 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7.7 | 394.12 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.7.7 | 32.00 | 293.00 | 325.00 | OK | |
| r-patched-linux-x86_64 | 1.7.7 | 12.65 | 294.07 | 306.72 | OK | |
| r-patched-solaris-x86 | 1.7.7 | 605.80 | NOTE | |||
| r-release-linux-x86_64 | 1.7.7 | 11.55 | 296.50 | 308.05 | OK | |
| r-release-osx-x86_64 | 1.7.7 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.7.7 | 23.00 | 351.00 | 374.00 | OK | |
| r-oldrel-osx-x86_64 | 1.7.7 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.7.7 | 21.00 | 288.00 | 309.00 | OK |
Version: 1.7.7
Check: data for non-ASCII characters
Result: NOTE
Note: found 1 marked UTF-8 string
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.7.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mapmisc.Rnw’ using knitr
Loading required package: sp
Loading required package: raster
map images will be cached in /Volumes/Temp/tmp/RtmpnmA2fX/mapmiscCache
--- finished re-building ‘mapmisc.Rnw’
--- re-building ‘north.Rmd’ using docco_linear
Quitting from lines 221-238 (north.Rmd)
Error: processing vignette 'north.Rmd' failed with diagnostics:
unable to find an inherited method for function 'coordinates' for signature '"numeric"'
--- failed re-building ‘north.Rmd’
pandoc --self-contained --to=html5 --css=http://diseasemapping.r-forge.r-project.org/webpage.css --output=north.html north.md
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'north'
xelatex -interaction=nonstopmode mapmisc.tex;
This is XeTeX, Version 3.14159265-2.6-0.999991 (TeX Live 2019) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
(./mapmisc.tex
LaTeX2e <2018-12-01>
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/article.cls
Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/size12.clo))
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-def/xetex.def)))
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/usr/local/texlive/2019/texmf-dist/tex/latex/framed/framed.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/local/texlive/2019/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2019/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/local/texlive/2019/texmf-dist/tex/latex/url/url.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hxetex.def
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/stringenc.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/caption.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/caption3.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/subcaption.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/ts1enc.def)))
No file mapmisc.aux.
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/ts1cmr.fd)
*geometry* driver: auto-detecting
*geometry* detected driver: xetex
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
Package hyperref Warning: Rerun to get /PageLabels entry.
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/se-ascii-print.def)
[1]
Overfull \hbox (920.52892pt too wide) in paragraph at lines 192--192
[]\TU/lmtt/m/n/12 ## [1] "+init=epsg:28992 +proj=sterea +lat_0=52.1561605555555
5 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +t
owgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no
_defs"[]
Overfull \hbox (920.52892pt too wide) in paragraph at lines 198--198
[]\TU/lmtt/m/n/12 ## [1] "+init=epsg:28992 +proj=sterea +lat_0=52.1561605555555
5 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +t
owgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no
_defs"[]
Overfull \hbox (22.7607pt too wide) in paragraph at lines 201--203
[]\TU/lmr/m/n/12 Maps which can be downloaded are shown at []$[][][][] [] [] []
[][][][][][][][][][][][][][] [] [][][][][][][][] [] [][][][][][][][][][] []
[2]
Overfull \hbox (389.14493pt too wide) in paragraph at lines 239--239
[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
]
Overfull \hbox (45.33289pt too wide) in paragraph at lines 274--274
[][]\TU/lmtt/b/n/12 plot[][]\TU/lmtt/m/n/12 (nldElev,[][]add[][]=[][]TRUE[][],[
][]col[][]=[][]\TU/lmtt/b/n/12 terrain.colors[][]\TU/lmtt/m/n/12 ([][]8[][]),[]
[]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]2[][],[] []legend.line[][]=[][]0
[][],)[][]
[3] [4] [5] [6] [7] [8] (./mapmisc.aux)
Package rerunfilecheck Warning: File `mapmisc.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
(see the transcript file for additional information)
Output written on mapmisc.pdf (8 pages).
Transcript written on mapmisc.log.
xelatex -interaction=nonstopmode mapmisc.tex
This is XeTeX, Version 3.14159265-2.6-0.999991 (TeX Live 2019) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
(./mapmisc.tex
LaTeX2e <2018-12-01>
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/article.cls
Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/size12.clo))
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-def/xetex.def)))
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/usr/local/texlive/2019/texmf-dist/tex/latex/framed/framed.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/local/texlive/2019/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2019/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/local/texlive/2019/texmf-dist/tex/latex/url/url.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hxetex.def
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/stringenc.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/caption.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/caption3.sty))
(/usr/local/texlive/2019/texmf-dist/tex/latex/caption/subcaption.sty)
(/usr/local/texlive/2019/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2019/texmf-dist/tex/latex/base/ts1enc.def))) (./mapmisc.aux
) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/ts1cmr.fd)
*geometry* driver: auto-detecting
*geometry* detected driver: xetex
(/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./mapmisc.out) (./mapmisc.out)
(/usr/local/texlive/2019/texmf-dist/tex/generic/oberdiek/se-ascii-print.def)
[1]
Overfull \hbox (920.52892pt too wide) in paragraph at lines 192--192
[]\TU/lmtt/m/n/12 ## [1] "+init=epsg:28992 +proj=sterea +lat_0=52.1561605555555
5 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +t
owgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no
_defs"[]
Overfull \hbox (920.52892pt too wide) in paragraph at lines 198--198
[]\TU/lmtt/m/n/12 ## [1] "+init=epsg:28992 +proj=sterea +lat_0=52.1561605555555
5 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +t
owgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no
_defs"[]
Overfull \hbox (22.7607pt too wide) in paragraph at lines 201--203
[]\TU/lmr/m/n/12 Maps which can be downloaded are shown at []$[][][][] [] [] []
[][][][][][][][][][][][][][] [] [][][][][][][][] [] [][][][][][][][][][] []
[2]
Overfull \hbox (389.14493pt too wide) in paragraph at lines 239--239
[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
]
Overfull \hbox (45.33289pt too wide) in paragraph at lines 274--274
[][]\TU/lmtt/b/n/12 plot[][]\TU/lmtt/m/n/12 (nldElev,[][]add[][]=[][]TRUE[][],[
][]col[][]=[][]\TU/lmtt/b/n/12 terrain.colors[][]\TU/lmtt/m/n/12 ([][]8[][]),[]
[]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]2[][],[] []legend.line[][]=[][]0
[][],)[][]
[3] [4] [5] [6] [7] [8] (./mapmisc.aux) )
(see the transcript file for additional information)
Output written on mapmisc.pdf (8 pages).
Transcript written on mapmisc.log.
R --slave -e "tools::compactPDF('mapmisc.pdf', gs_quality='ebook')"
compacted ‘mapmisc.pdf’ from 440Kb to 113Kb
rm -rf *.md *.tex *.toc *.bbl *.blg *.aux *.out *.log *.spl *tikzDictionary *.md figure/ cache/ *.dvi *.4* *.css *.idv *.lg *.tmp *.xref *.gz my*.bib *.nav *.xml *.vrb *.snm
SUMMARY: processing the following file failed:
‘north.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.7.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘mapmisc.Rnw’ using knitr
Loading required package: sp
Loading required package: raster
map images will be cached in /tmp/Rtmpvjscv5/mapmiscCache
--- finished re-building ‘mapmisc.Rnw’
--- re-building ‘north.Rmd’ using docco_linear
Quitting from lines 221-238 (north.Rmd)
Error: processing vignette 'north.Rmd' failed with diagnostics:
unable to find an inherited method for function 'coordinates' for signature '"numeric"'
--- failed re-building ‘north.Rmd’
pandoc --self-contained --to=html5 --css=http://diseasemapping.r-forge.r-project.org/webpage.css --output=north.html north.md
make: pandoc: No such file or directory
make: *** [north.html] Error 1
Error in tools:::buildVignettes(dir = "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/mapmisc.Rcheck/vign_test/mapmisc", :
running 'make' failed
Execution halted
Flavor: r-oldrel-osx-x86_64