CRAN Package Check Results for Package knockoff

Last updated on 2020-05-31 07:48:49 CEST.

Check Details

Version: 0.3.2
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'flare'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.2
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
    Unknown package 'flare' in Rd xrefs
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.2
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in 'knockoff-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: stat.sqrt_lasso
    > ### Title: Importance statistics based on the square-root lasso
    > ### Aliases: stat.sqrt_lasso
    >
    > ### ** Examples
    >
    > p=50; n=50; k=10
    > mu = rep(0,p); Sigma = diag(p)
    > X = matrix(rnorm(n*p),n)
    > nonzero = sample(p, k)
    > beta = 3.5 * (1:p %in% nonzero)
    > y = X %*% beta + rnorm(n)
    > knockoffs = function(X) create.gaussian(X, mu, Sigma)
    >
    > # Basic usage with default arguments
    > result = knockoff.filter(X, y, knockoffs=knockoffs, statistic=stat.sqrt_lasso)
    Error: flare is not installed
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘flare’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.3.2
Check: Rd cross-references
Result: NOTE
    Unknown package ‘flare’ in Rd xrefs
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.2
Check: examples
Result: ERROR
    Running examples in ‘knockoff-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: stat.sqrt_lasso
    > ### Title: Importance statistics based on the square-root lasso
    > ### Aliases: stat.sqrt_lasso
    >
    > ### ** Examples
    >
    > p=50; n=50; k=10
    > mu = rep(0,p); Sigma = diag(p)
    > X = matrix(rnorm(n*p),n)
    > nonzero = sample(p, k)
    > beta = 3.5 * (1:p %in% nonzero)
    > y = X %*% beta + rnorm(n)
    > knockoffs = function(X) create.gaussian(X, mu, Sigma)
    >
    > # Basic usage with default arguments
    > result = knockoff.filter(X, y, knockoffs=knockoffs, statistic=stat.sqrt_lasso)
    Error: flare is not installed
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.3.2
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Matrix
    Loaded glmnet 4.0
    --- finished re-building ‘advanced.Rmd’
    
    --- re-building ‘fixed.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘fixed.Rmd’
    
    --- re-building ‘hiv.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘hiv.Rmd’
    
    Cpu Limit Exceeded - core dumped
    --- re-building ‘knockoff.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Matrix
    Loaded glmnet 4.0
    SUMMARY: processing the following file failed:
     ‘knockoff.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.3.2
Check: re-building of vignette outputs
Result: FAIL
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64