CRAN Package Check Results for Package MALDIrppa

Last updated on 2020-06-09 08:49:19 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 5.37 119.06 124.43 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 3.83 91.58 95.41 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 82.70 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.2 71.55 ERROR
r-devel-windows-ix86+x86_64 1.0.2 15.00 166.00 181.00 OK
r-patched-linux-x86_64 1.0.2 4.47 118.47 122.94 OK
r-patched-solaris-x86 1.0.2 107.20 ERROR
r-release-linux-x86_64 1.0.2 4.15 118.99 123.14 OK
r-release-osx-x86_64 1.0.2 OK
r-release-windows-ix86+x86_64 1.0.2 10.00 172.00 182.00 OK
r-oldrel-osx-x86_64 1.0.2 OK
r-oldrel-windows-ix86+x86_64 1.0.2 11.00 161.00 172.00 OK

Check Details

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘wmtsa’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.0.2
Check: examples
Result: ERROR
    Running examples in ‘MALDIrppa-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: alignPeaks
    > ### Title: Compact peak alignment process for 'MassPeaks' objects
    > ### Aliases: alignPeaks
    >
    > ### ** Examples
    >
    > # Load example data
    >
    > data(spectra) # list of MassSpectra class objects
    >
    > # Some pre-processing
    >
    > spectra <- screenSpectra(spectra)$fspectra
    > spectra <- transformIntensity(spectra, method = "sqrt")
    > spectra <- wavSmoothing(spectra)
    Error in loadNamespace(name) : there is no package called ‘wmtsa’
    Calls: wavSmoothing ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [14s/21s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library("testthat")
     > test_check("MALDIrppa")
     Loading required package: MALDIrppa
     Loading required package: MALDIquant
    
     This is MALDIquant version 1.19.3
     Quantitative Analysis of Mass Spectrometry Data
     See '?MALDIquant' for more information about this package.
    
     Loading required package: signal
    
     Attaching package: 'signal'
    
     The following objects are masked from 'package:stats':
    
     filter, poly
    
     Loading required package: robustbase
     Loading required package: lattice
     ── 1. Error: wavSmoothing returns expected results (@test_all.R#70) ───────────
     error in evaluating the argument 'object' in selecting a method for function 'intensity': there is no package called 'wmtsa'
     Backtrace:
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 19 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: wavSmoothing returns expected results (@test_all.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘MALDIrppa_vignette.Rmd’ using rmarkdown
    Loading required package: MALDIquant
    
    This is MALDIquant version 1.19.3
    Quantitative Analysis of Mass Spectrometry Data
     See '?MALDIquant' for more information about this package.
    
    Loading required package: signal
    
    Attaching package: 'signal'
    
    The following objects are masked from 'package:stats':
    
     filter, poly
    
    Loading required package: robustbase
    Loading required package: lattice
    Quitting from lines 112-116 (MALDIrppa_vignette.Rmd)
    Error: processing vignette 'MALDIrppa_vignette.Rmd' failed with diagnostics:
    there is no package called 'wmtsa'
    --- failed re-building ‘MALDIrppa_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘MALDIrppa_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library("testthat")
     > test_check("MALDIrppa")
     Loading required package: MALDIrppa
     Loading required package: MALDIquant
    
     This is MALDIquant version 1.19.3
     Quantitative Analysis of Mass Spectrometry Data
     See '?MALDIquant' for more information about this package.
    
     Loading required package: signal
    
     Attaching package: 'signal'
    
     The following objects are masked from 'package:stats':
    
     filter, poly
    
     Loading required package: robustbase
     Loading required package: lattice
     ── 1. Error: wavSmoothing returns expected results (@test_all.R#70) ───────────
     error in evaluating the argument 'object' in selecting a method for function 'intensity': there is no package called 'wmtsa'
     Backtrace:
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 19 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: wavSmoothing returns expected results (@test_all.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [19s/23s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library("testthat")
     > test_check("MALDIrppa")
     Loading required package: MALDIrppa
     Loading required package: MALDIquant
    
     This is MALDIquant version 1.19.3
     Quantitative Analysis of Mass Spectrometry Data
     See '?MALDIquant' for more information about this package.
    
     Loading required package: signal
    
     Attaching package: 'signal'
    
     The following objects are masked from 'package:stats':
    
     filter, poly
    
     Loading required package: robustbase
     Loading required package: lattice
     ── 1. Error: wavSmoothing returns expected results (@test_all.R#70) ───────────
     error in evaluating the argument 'object' in selecting a method for function 'intensity': there is no package called 'wmtsa'
     Backtrace:
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 19 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: wavSmoothing returns expected results (@test_all.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘MALDIrppa_vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: MALDIquant
    
    This is MALDIquant version 1.19.3
    Quantitative Analysis of Mass Spectrometry Data
     See '?MALDIquant' for more information about this package.
    
    Loading required package: signal
    
    Attaching package: 'signal'
    
    The following objects are masked from 'package:stats':
    
     filter, poly
    
    Loading required package: robustbase
    Loading required package: lattice
    Quitting from lines 112-116 (MALDIrppa_vignette.Rmd)
    Error: processing vignette 'MALDIrppa_vignette.Rmd' failed with diagnostics:
    there is no package called 'wmtsa'
    --- failed re-building ‘MALDIrppa_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘MALDIrppa_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86