CRAN Package Check Results for Package treeplyr

Last updated on 2020-06-12 10:00:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.7 20.06 87.61 107.67 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.7 17.02 66.92 83.94 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.7 138.76 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.7 133.18 ERROR
r-devel-windows-ix86+x86_64 0.1.7 73.00 174.00 247.00 ERROR
r-patched-linux-x86_64 0.1.7 18.27 83.39 101.66 ERROR
r-patched-solaris-x86 0.1.7 185.90 ERROR
r-release-linux-x86_64 0.1.7 18.14 82.96 101.10 ERROR
r-release-osx-x86_64 0.1.7 OK
r-release-windows-ix86+x86_64 0.1.7 47.00 198.00 245.00 ERROR
r-oldrel-osx-x86_64 0.1.7 OK
r-oldrel-windows-ix86+x86_64 0.1.7 63.00 171.00 234.00 ERROR

Check Details

Version: 0.1.7
Check: examples
Result: ERROR
    Running examples in 'treeplyr-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     x
     1. +-dplyr::group_by(td, ecomorph)
     2. \-dplyr:::group_by.default(td, ecomorph)
     3. +-dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. \-treeplyr:::group_by_.treedata(...)
     5. \-dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.7
Check: examples
Result: ERROR
    Running examples in ‘treeplyr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     █
     1. ├─dplyr::group_by(td, ecomorph)
     2. └─dplyr:::group_by.default(td, ecomorph)
     3. ├─dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. └─treeplyr:::group_by_.treedata(...)
     5. └─dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.7
Check: examples
Result: ERROR
    Running examples in ‘treeplyr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     █
     1. ├─dplyr::group_by(td, ecomorph)
     2. └─dplyr:::group_by.default(td, ecomorph)
     3. ├─dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. └─treeplyr:::group_by_.treedata(...)
     5. └─dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.7
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'treeplyr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     x
     1. +-dplyr::group_by(td, ecomorph)
     2. \-dplyr:::group_by.default(td, ecomorph)
     3. +-dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. \-treeplyr:::group_by_.treedata(...)
     5. \-dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.7
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'treeplyr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    Warning in type.convert.default(apply(data[, x, drop = FALSE], 1, as.character)) :
     'as.is' should be specified by the caller; using TRUE
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     x
     1. +-dplyr::group_by(td, ecomorph)
     2. \-dplyr:::group_by.default(td, ecomorph)
     3. +-dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. \-treeplyr:::group_by_.treedata(...)
     5. \-dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.7
Check: examples
Result: ERROR
    Running examples in ‘treeplyr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     █
     1. ├─dplyr::group_by(td, ecomorph)
     2. └─dplyr:::group_by.default(td, ecomorph)
     3. ├─dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. └─treeplyr:::group_by_.treedata(...)
     5. └─dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.7
Check: examples
Result: ERROR
    Running examples in ‘treeplyr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     █
     1. ├─dplyr::group_by(td, ecomorph)
     2. └─dplyr:::group_by.default(td, ecomorph)
     3. ├─dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. └─treeplyr:::group_by_.treedata(...)
     5. └─dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.7
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'treeplyr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     x
     1. +-dplyr::group_by(td, ecomorph)
     2. \-dplyr:::group_by.default(td, ecomorph)
     3. +-dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. \-treeplyr:::group_by_.treedata(...)
     5. \-dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.7
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'treeplyr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: group_by_.treedata
    > ### Title: Function for grouping an object of class 'treedata'
    > ### Aliases: group_by_.treedata group_by.treedata ungroup.grouped_treedata
    >
    > ### ** Examples
    >
    > data(anolis)
    > td <- make.treedata(anolis$phy, anolis$dat)
    > tdGrouped <- group_by(td, ecomorph)
    Warning: `group_by_()` is deprecated as of dplyr 0.7.0.
    Please use `group_by()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Error: `vars` must be a character vector.
    Backtrace:
     x
     1. +-dplyr::group_by(td, ecomorph)
     2. \-dplyr:::group_by.default(td, ecomorph)
     3. +-dplyr::group_by_(.data, .dots = compat_as_lazy_dots(...), add = add)
     4. \-treeplyr:::group_by_.treedata(...)
     5. \-dplyr::grouped_df(groups$data, groups$groups)
    Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64