Last updated on 2020-08-01 07:48:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 13.43 | 131.14 | 144.57 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 9.44 | 97.30 | 106.74 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 181.97 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 173.04 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.2.0 | 43.00 | 132.00 | 175.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.0 | 12.26 | 124.88 | 137.14 | ERROR | |
| r-patched-solaris-x86 | 0.2.0 | 245.20 | ERROR | |||
| r-release-linux-x86_64 | 0.2.0 | 10.45 | 124.33 | 134.78 | ERROR | |
| r-release-macos-x86_64 | 0.2.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.2.0 | 56.00 | 156.00 | 212.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.2.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.0 | 33.00 | 140.00 | 173.00 | ERROR |
Version: 0.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [11s/10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
-- 1. Error: (unknown) (@test_explainer.R#3) ----------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 3. Error: (unknown) (@test_plot_explainer.R#3) -----------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 4. Error: (unknown) (@test_plot_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 6. Error: (unknown) (@test_plot_variable_response.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 7. Error: (unknown) (@test_prints.R#3) -------------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 9. Error: (unknown) (@test_surv_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) -----------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 11. Error: (unknown) (@test_surv_variable_response.R#3) --------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
== testthat results ===========================================================
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'Custom_predict_for_survival_models.Rmd' using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 53-60 (Custom_predict_for_survival_models.Rmd)
Error: processing vignette 'Custom_predict_for_survival_models.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building 'Custom_predict_for_survival_models.Rmd'
--- re-building 'Global_explanations.Rmd' using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 54-63 (Global_explanations.Rmd)
Error: processing vignette 'Global_explanations.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building 'Global_explanations.Rmd'
--- re-building 'How_to_compare_models_with_survxai.Rmd' using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Quitting from lines 76-79 (How_to_compare_models_with_survxai.Rmd)
Error: processing vignette 'How_to_compare_models_with_survxai.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building 'How_to_compare_models_with_survxai.Rmd'
--- re-building 'Local_explanations.Rmd' using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 54-62 (Local_explanations.Rmd)
Error: processing vignette 'Local_explanations.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building 'Local_explanations.Rmd'
SUMMARY: processing the following files failed:
'Custom_predict_for_survival_models.Rmd' 'Global_explanations.Rmd'
'How_to_compare_models_with_survxai.Rmd' 'Local_explanations.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘DALEX’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘Custom_predict_for_survival_models.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 53-60 (Custom_predict_for_survival_models.Rmd)
Error: processing vignette 'Custom_predict_for_survival_models.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building ‘Custom_predict_for_survival_models.Rmd’
--- re-building ‘Global_explanations.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 54-63 (Global_explanations.Rmd)
Error: processing vignette 'Global_explanations.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building ‘Global_explanations.Rmd’
--- re-building ‘How_to_compare_models_with_survxai.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Quitting from lines 76-79 (How_to_compare_models_with_survxai.Rmd)
Error: processing vignette 'How_to_compare_models_with_survxai.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building ‘How_to_compare_models_with_survxai.Rmd’
--- re-building ‘Local_explanations.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Attaching package: 'survival'
The following object is masked _by_ '.GlobalEnv':
pbc
Loading required package: Formula
Loading required package: ggplot2
Attaching package: 'Hmisc'
The following objects are masked from 'package:base':
format.pval, units
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 54-62 (Local_explanations.Rmd)
Error: processing vignette 'Local_explanations.Rmd' failed with diagnostics:
object 'n' not found
--- failed re-building ‘Local_explanations.Rmd’
SUMMARY: processing the following files failed:
‘Custom_predict_for_survival_models.Rmd’ ‘Global_explanations.Rmd’
‘How_to_compare_models_with_survxai.Rmd’ ‘Local_explanations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
-- 1. Error: (unknown) (@test_explainer.R#3) ----------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 3. Error: (unknown) (@test_plot_explainer.R#3) -----------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 4. Error: (unknown) (@test_plot_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 6. Error: (unknown) (@test_plot_variable_response.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 7. Error: (unknown) (@test_prints.R#3) -------------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 9. Error: (unknown) (@test_surv_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) -----------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 11. Error: (unknown) (@test_surv_variable_response.R#3) --------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
== testthat results ===========================================================
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
── 1. Error: (unknown) (@test_explainer.R#3) ──────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 3. Error: (unknown) (@test_plot_explainer.R#3) ─────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 4. Error: (unknown) (@test_plot_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ──────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 6. Error: (unknown) (@test_plot_variable_response.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 7. Error: (unknown) (@test_prints.R#3) ─────────────────────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) ───────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 9. Error: (unknown) (@test_surv_model_performance.R#3) ─────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) ─────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
── 11. Error: (unknown) (@test_surv_variable_response.R#3) ────────────────────
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(survxai)
Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
>
> test_check("survxai")
-- 1. Error: (unknown) (@test_explainer.R#3) ----------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 2. Error: (unknown) (@test_plot_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 3. Error: (unknown) (@test_plot_explainer.R#3) -----------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 4. Error: (unknown) (@test_plot_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 5. Error: (unknown) (@test_plot_prediction_breakdown.R#3) ------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 6. Error: (unknown) (@test_plot_variable_response.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 7. Error: (unknown) (@test_prints.R#3) -------------------------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 8. Error: (unknown) (@test_surv_ceteris_paribus.R#3) -----------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 9. Error: (unknown) (@test_surv_model_performance.R#3) ---------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 10. Error: (unknown) (@test_surv_prediction_breakdown.R#3) -----------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
-- 11. Error: (unknown) (@test_surv_variable_response.R#3) --------------------
object 'n' not found
Backtrace:
1. base::source("objects_for_tests.R")
5. rms::cph(...)
== testthat results ===========================================================
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Error: (unknown) (@test_explainer.R#3)
2. Error: (unknown) (@test_plot_ceteris_paribus.R#3)
3. Error: (unknown) (@test_plot_explainer.R#3)
4. Error: (unknown) (@test_plot_model_performance.R#3)
5. Error: (unknown) (@test_plot_prediction_breakdown.R#3)
6. Error: (unknown) (@test_plot_variable_response.R#3)
7. Error: (unknown) (@test_prints.R#3)
8. Error: (unknown) (@test_surv_ceteris_paribus.R#3)
9. Error: (unknown) (@test_surv_model_performance.R#3)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64