CRAN Package Check Results for Package mpMap2

Last updated on 2020-09-15 05:48:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.4 1008.00 347.25 1355.25 OK
r-devel-linux-x86_64-debian-gcc 1.0.4 800.42 266.09 1066.51 OK
r-devel-linux-x86_64-fedora-clang 1.0.4 1956.68 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.4 1799.90 OK
r-devel-windows-ix86+x86_64 1.0.3 1998.00 698.00 2696.00 NOTE
r-patched-linux-x86_64 1.0.4 826.57 334.87 1161.44 OK
r-patched-solaris-x86 1.0.4 1376.10 WARN
r-release-linux-x86_64 1.0.4 839.09 336.52 1175.61 OK
r-release-macos-x86_64 1.0.4 ERROR
r-release-windows-ix86+x86_64 1.0.4 1604.00 700.00 2304.00 NOTE
r-oldrel-macos-x86_64 1.0.4 NOTE
r-oldrel-windows-ix86+x86_64 1.0.4 1387.00 543.00 1930.00 NOTE

Additional issues

noOMP noOMP

Check Details

Version: 1.0.4
Check: installed package size
Result: NOTE
     installed size is 82.6Mb
     sub-directories of 1Mb or more:
     R 1.1Mb
     libs 78.8Mb
     mathematica 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.3
Check: installed package size
Result: NOTE
     installed size is 17.8Mb
     sub-directories of 1Mb or more:
     R 1.1Mb
     libs 13.9Mb
     mathematica 1.5Mb
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘mpMap2.Rnw’ using Sweave
    Warning in mpcross(founders = founders, finals = finals, pedigree = pedigreeSF, :
     Removing data for 1 markers, because these markers have NA founder alleles
    Error in validObject(.Object) :
     invalid class “geneticData” object: 1: Coding error for marker D1M3: Founder allele 10 was not present in @hetData[[3]]
    invalid class “geneticData” object: 2: Coding error for marker D1M4: Founder allele 2 was not present in @hetData[[4]]
    invalid class “geneticData” object: 3: Coding error for marker D1M4: Founder allele 3 was not present in @hetData[[4]]
    invalid class “geneticData” object: 4: Coding error for marker D1M4: Founder allele 4 was not present in @hetData[[4]]
    invalid class “geneticData” object: 5: Coding error for marker D1M5: Founder allele 1 was not present in @hetData[[5]]
    invalid class “geneticData” object: 6: Omitting details of further coding errors
    
    Error: processing vignette 'mpMap2.Rnw' failed with diagnostics:
     chunk 23 (label = rfExample)
    Error : C stack usage 348820728 is too close to the limit
    
    --- failed re-building ‘mpMap2.Rnw’
    
    Error: no more error handlers available (recursive errors?); invoking 'abort' restart
    Error in as.character(substitute(pkg)) :
     cannot coerce type 'closure' to vector of type 'character'
    Calls: <Anonymous> -> ::
    Execution halted
    Warning: stack imbalance in '{', 7 then -6
    Fatal error: error during cleanup
    
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 1.0.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Heatplus’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.0.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-macos-x86_64