CRAN Package Check Results for Package RUVIIIC

Last updated on 2020-09-21 07:56:14 CEST.

Additional issues

clang-UBSAN noOMP

Check Details

Version: 1.0.17
Check: installed package size
Result: NOTE
     installed size is 50.4Mb
     sub-directories of 1Mb or more:
     libs 49.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.0.17
Check: examples
Result: ERROR
    Running examples in ‘RUVIIIC-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RUVIII_C
    > ### Title: RUV-III-C
    > ### Aliases: RUVIII_C
    >
    > ### ** Examples
    >
    > data(crossLab)
    > #Design matrix containing information about which runs are technical replicates of each other.
    > #In this case, random pairings of mass-spec runs analysing the same sample, at different sites.
    > #Note that we specify no intercept term!
    > M <- model.matrix(~ grouping - 1, data = peptideData)
    > #Get out the list of peptides, both HEK (control) and peptides of interest.
    > peptides <- setdiff(colnames(peptideData), c("filename", "site", "mixture", "Date", "grouping"))
    > #Reduce the data matrix to only the peptide data
    > onlyPeptideData <- data.matrix(peptideData[, peptides])
    > #All the human peptides are potential controls. That is, everything that's not an SIS peptides.
    > potentialControls <- setdiff(peptides, sisPeptides)
    > #But we want to use controls that are always found
    > potentialControlsAlwaysFound <- names(which(apply(onlyPeptideData[, potentialControls], 2,
    + function(x) sum(is.na(x))) == 0))
    > #Actually run correction
    > #Set number of threads for CRAN
    > RUVIIIC::omp_set_num_threads(2L)
    Error in RUVIIIC_omp_set_num_threads(num) :
     Not built with openmp suppport
    Calls: <Anonymous> -> RUVIIIC_omp_set_num_threads
    Execution halted
Flavor: r-release-macos-x86_64