Last updated on 2021-01-26 10:13:13 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 9.27 | 63.65 | 72.92 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 7.17 | 49.69 | 56.86 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 96.42 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 85.25 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.0.1 | 21.00 | 104.00 | 125.00 | ERROR | |
| r-patched-linux-x86_64 | 0.0.1 | 9.24 | 59.58 | 68.82 | ERROR | |
| r-patched-solaris-x86 | 0.0.1 | 136.70 | ERROR | |||
| r-release-linux-x86_64 | 0.0.1 | 8.71 | 59.71 | 68.42 | ERROR | |
| r-release-macos-x86_64 | 0.0.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.0.1 | 20.00 | 96.00 | 116.00 | OK | |
| r-oldrel-macos-x86_64 | 0.0.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.1 | 16.00 | 99.00 | 115.00 | ERROR |
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in 'cvxbiclustr-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cobra
> ### Title: Convex Biclustering Algorithm
> ### Aliases: cobra
>
> ### ** Examples
>
> ## Create bicluster path
> ## Example: Lung
> X <- lung
> X <- X - mean(X)
> X <- X/norm(X,'f')
>
> ## Create annotation for heatmap
> types <- colnames(lung)
> ty <- as.numeric(factor(types))
> cols <- rainbow(4)
> YlGnBu5 <- c('#ffffd9','#c7e9b4','#41b6c4','#225ea8','#081d58')
> hmcols <- colorRampPalette(YlGnBu5)(256)
>
> ## Construct weights and edge-incidence matrices
> phi <- 0.5; k <- 5
> wts <- gkn_weights(X,phi=phi,k_row=k,k_col=k)
> w_row <- wts$w_row
> w_col <- wts$w_col
> E_row <- wts$E_row
> E_col <- wts$E_col
>
> ## Connected Components of Row and Column Graphs
> wts$nRowComp
[1] 1
> wts$nColComp
[1] 1
>
> #### Initialize path parameters and structures
> nGamma <- 5
> gammaSeq <- 10**seq(0,3,length.out=nGamma)
>
> ## Generate solution path
> sol <- cobra_validate(X,E_row,E_col,w_row,w_col,gammaSeq)
Error in apply(el, 1, function(x) rep(unname(x[1:2]), x[3])) :
dim(X) must have a positive length
Calls: cobra_validate ... graph.adjacency -> graph.adjacency.sparse -> unlist -> apply
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0.1
Check: compiled code
Result: NOTE
File ‘cvxbiclustr/libs/cvxbiclustr.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘cvxbiclustr-Ex.R’ failed
The error most likely occurred in:
> ### Name: cobra
> ### Title: Convex Biclustering Algorithm
> ### Aliases: cobra
>
> ### ** Examples
>
> ## Create bicluster path
> ## Example: Lung
> X <- lung
> X <- X - mean(X)
> X <- X/norm(X,'f')
>
> ## Create annotation for heatmap
> types <- colnames(lung)
> ty <- as.numeric(factor(types))
> cols <- rainbow(4)
> YlGnBu5 <- c('#ffffd9','#c7e9b4','#41b6c4','#225ea8','#081d58')
> hmcols <- colorRampPalette(YlGnBu5)(256)
>
> ## Construct weights and edge-incidence matrices
> phi <- 0.5; k <- 5
> wts <- gkn_weights(X,phi=phi,k_row=k,k_col=k)
> w_row <- wts$w_row
> w_col <- wts$w_col
> E_row <- wts$E_row
> E_col <- wts$E_col
>
> ## Connected Components of Row and Column Graphs
> wts$nRowComp
[1] 1
> wts$nColComp
[1] 1
>
> #### Initialize path parameters and structures
> nGamma <- 5
> gammaSeq <- 10**seq(0,3,length.out=nGamma)
>
> ## Generate solution path
> sol <- cobra_validate(X,E_row,E_col,w_row,w_col,gammaSeq)
Error in apply(el, 1, function(x) rep(unname(x[1:2]), x[3])) :
dim(X) must have a positive length
Calls: cobra_validate ... graph.adjacency -> graph.adjacency.sparse -> unlist -> apply
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 0.0.1
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'cvxbiclustr-Ex.R' failed
The error most likely occurred in:
> ### Name: cobra
> ### Title: Convex Biclustering Algorithm
> ### Aliases: cobra
>
> ### ** Examples
>
> ## Create bicluster path
> ## Example: Lung
> X <- lung
> X <- X - mean(X)
> X <- X/norm(X,'f')
>
> ## Create annotation for heatmap
> types <- colnames(lung)
> ty <- as.numeric(factor(types))
> cols <- rainbow(4)
> YlGnBu5 <- c('#ffffd9','#c7e9b4','#41b6c4','#225ea8','#081d58')
> hmcols <- colorRampPalette(YlGnBu5)(256)
>
> ## Construct weights and edge-incidence matrices
> phi <- 0.5; k <- 5
> wts <- gkn_weights(X,phi=phi,k_row=k,k_col=k)
> w_row <- wts$w_row
> w_col <- wts$w_col
> E_row <- wts$E_row
> E_col <- wts$E_col
>
> ## Connected Components of Row and Column Graphs
> wts$nRowComp
[1] 1
> wts$nColComp
[1] 1
>
> #### Initialize path parameters and structures
> nGamma <- 5
> gammaSeq <- 10**seq(0,3,length.out=nGamma)
>
> ## Generate solution path
> sol <- cobra_validate(X,E_row,E_col,w_row,w_col,gammaSeq)
Error in apply(el, 1, function(x) rep(unname(x[1:2]), x[3])) :
dim(X) must have a positive length
Calls: cobra_validate ... graph.adjacency -> graph.adjacency.sparse -> unlist -> apply
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.0.1
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'cvxbiclustr-Ex.R' failed
The error most likely occurred in:
> ### Name: cobra
> ### Title: Convex Biclustering Algorithm
> ### Aliases: cobra
>
> ### ** Examples
>
> ## Create bicluster path
> ## Example: Lung
> X <- lung
> X <- X - mean(X)
> X <- X/norm(X,'f')
>
> ## Create annotation for heatmap
> types <- colnames(lung)
> ty <- as.numeric(factor(types))
> cols <- rainbow(4)
> YlGnBu5 <- c('#ffffd9','#c7e9b4','#41b6c4','#225ea8','#081d58')
> hmcols <- colorRampPalette(YlGnBu5)(256)
>
> ## Construct weights and edge-incidence matrices
> phi <- 0.5; k <- 5
> wts <- gkn_weights(X,phi=phi,k_row=k,k_col=k)
> w_row <- wts$w_row
> w_col <- wts$w_col
> E_row <- wts$E_row
> E_col <- wts$E_col
>
> ## Connected Components of Row and Column Graphs
> wts$nRowComp
[1] 1
> wts$nColComp
[1] 1
>
> #### Initialize path parameters and structures
> nGamma <- 5
> gammaSeq <- 10**seq(0,3,length.out=nGamma)
>
> ## Generate solution path
> sol <- cobra_validate(X,E_row,E_col,w_row,w_col,gammaSeq)
Error in apply(el, 1, function(x) rep(unname(x[1:2]), x[3])) :
dim(X) must have a positive length
Calls: cobra_validate ... graph.adjacency -> graph.adjacency.sparse -> unlist -> apply
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64